Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1159 ATGGAAGTGAATGAAAGTAACTTCTTAGAGGAACTACTAGCTCAAACAAATGAGTTCTTGTCAAATGGTTGGACTAGTAGTAATACTACTACAACTTTTGATGATAGCTTAGATCCATATAATCAAATCACTAGCAGTTACTTCATTCCAAACTCTTCCTCTTGCTATTCAGAAAATTTTTTATTTCCACCCCACCTTAACCTCACCGACATTAATGAAGCAGCACTCTTTGATCCCTTTGTTGTTGCTGATGATCCACCACCCCATTTGGGCCTGCAACAAGATTTCCGCCCCATTTCCAACATTGACAAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAAAAGTGGGCCTTGTTAATTTTGCAGGCGATGATCATCAGATTCATAAAACAGAGTACTCTGTTTTTGATCATCAAATTCAAGTTCAATCTCCTAATGATGTGATACCAATTTTCAGAATGGGCTCGAATATAGAGAGAAGGAAGAATGTAATTATTGGGCCTAAGAAAAAGATCGTGGGCCAGCCCTCCAAGAATCTAATGGCTGAGAGGAGGAGAAGAAAAAGATTGAATGATAGACTCGCCATGCTTAGATCCATTGTTCCTAAAATAAGCAAGATGGATAGAACCGCAATACTTGGAGATGCTATAGATTATACGAAAGAGCTTCTAGAGAAAGTGGCCAAACTACAAAAAGAAATTGATGATATGGGCACTAAAGATAATGAACCGTTTAACACGCTAAACATTTTTGAGGACATAAAGCCGAACCAACTGATAGTAAGAAGAAATTCACCAAAGTTCGATGTCGAAATGAGATCGACCGGCGAGATAAGTATGGAGATTTTGTGCAGTATGAAGCCCGGGTCGTTGTTATCGACGGTGAATAGTTTAGAAGAATTAGGGCTTGAGATTCAACAATGTGTCATTAGCTGCTTTAGTAATGACTTCTCAATGCGAGCTTCTTGTAATTCTAATGAGCAAGGAATGACAGTAAGCAGTGAAGACATAAAGCAAGCATTGTTAAGAAGTGCGGGATACGGAGGAAGGTTCTAG 1074 39.11 MEVNESNFLEELLAQTNEFLSNGWTSSNTTTTFDDSLDPYNQITSSYFIPNSSSCYSENFLFPPHLNLTDINEAALFDPFVVADDPPPHLGLQQDFRPISNIDKEEEEEEEEEEEEEEEEKVGLVNFAGDDHQIHKTEYSVFDHQIQVQSPNDVIPIFRMGSNIERRKNVIIGPKKKIVGQPSKNLMAERRRRKRLNDRLAMLRSIVPKISKMDRTAILGDAIDYTKELLEKVAKLQKEIDDMGTKDNEPFNTLNIFEDIKPNQLIVRRNSPKFDVEMRSTGEISMEILCSMKPGSLLSTVNSLEELGLEIQQCVISCFSNDFSMRASCNSNEQGMTVSSEDIKQALLRSAGYGGRF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8553316 8555356 - Conep17aG0118800.1 Cone17ag1159 456636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1159 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 257 IPR036638 GO:0046983(InterPro)
Cone17ag1159 357 SMART finulus 186 235 IPR011598 GO:0046983(InterPro)
Cone17ag1159 357 MobiDBLite consensus disorder prediction 104 120 - -
Cone17ag1159 357 MobiDBLite consensus disorder prediction 88 120 - -
Cone17ag1159 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983(InterPro)
Cone17ag1159 357 Coils Coil 226 246 - -
Cone17ag1159 357 Coils Coil 99 124 - -
Cone17ag1159 357 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 113 353 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone17ag1159 357 Gene3D - 180 246 IPR036638 GO:0046983(InterPro)
Cone17ag1159 357 Pfam Helix-loop-helix DNA-binding domain 187 229 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0017 Cone-Chr11:112158 Cone17ag1159 Cone-Chr17:8553316 2.32E-37 dispersed
Cone17ag1159 Cone-Chr17:8553316 Cone18ag1463 Cone-Chr18:9795181 9.71E-37 dispersed
Cone17ag1159 Cone-Chr17:8553316 Cone20ag0570 Cone-Chr20:3250453 3.53E-188 wgd
Cone17ag1159 Cone-Chr17:8553316 Cone4ag1276 Cone-Chr4:10485093 5.08E-74 wgd
Cone17ag1159 Cone-Chr17:8553316 Cone7ag0875 Cone-Chr7:6768236 3.03E-69 wgd
Cone17ag1159 Cone-Chr17:8553316 Cone9ag1430 Cone-Chr9:10624747 8.05E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45092 PF13639 zf-RING_2 1.00E-10 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1159 - - - 0.0