Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1161 ATGGCTTCTTTACCTTCAGTGACCATCAGTAAGACTCTCAAGATCGACACTGAATTCAGAAAACAACATTCTTCCACCTTCCCTCTCACCGACAAGACATCGACCATCACGTATCGGAAAAACGATGTAACCACCCATTTGAATGGAATTTCTGAACCAAAGTCCCTAAACTTTAATGAAGCCCTCTCTCGTATACAGGAAGGTATGACGATCGATCCGTCTTACTACGTTCCTTTATTGCAAAAATGCATCGATGGGAATTCCGCTCAAGAAGCTCAAATCATACATACCCATATAATAAAAACTGGGACACATGAAGATTTCTTTCTCATGACTTTCCTAGTAAATGTCTATACAAAATGTGGGATCATGGAAAATGCCCGGAAGGTGTTTGATAAAATGCCTAAAAGAAATGTCGTAGCATGGACAACTTTGATGACGGGTTATGTTCACAATTCTCGGCCAGAATTTGCCGTGAAGGTTTTCCTAGAAATGTTAGAAGCTGGAGCTTATCCTACTAATTACACTCTAGGGATTCTTTTGAATGCTTGTTCTTCCTTGCTTTCTATGGAACTAGGTAAGCAAATCCATGCTTATATAATCAAATATCATATCGATTTCGATACGAGTATAGGGAACTCCCTTTCTAGCTTTTACTCCAAATGTGGGAATTTAGAGTCTGCCTTAAAATCCTTCGAGCAGATTAGAGAAAAGAATGTGATATCTTGGACCTCGGTTATATCTGCTTGTAGTGACAACGGTTCATCAGCTAAAGGATTAAGGATTTTCACCAAGATGCGTTCTCAAGGCATTGAGCCTAATGAGTATACCTTGACGAGCGTATTAAGTTTGTGTTGTGTAATGCTAAGTTTGAAGTTAGGAGCTCAAGTTCACTCCTTAAGTATCAAACTAGGGTACAAATCAAGCCTACCCATAAAAAATTGTGTCATGTATTTGTACCTTAAATGTGGGTGGATCAATGAGGCTCGTAAATTATTCGAAGGGATGGAGAAAGATATGAATTTGATCACGTGGAATGCAATGATAGCGGGCCATGCTAAAATGATGGAAACTGCAATCGATGATCTTTCTGTGCACAAAAGTGGGAACCAGGCACTTGATATTTTCTTGAAATTGAATCGCTCTGGGATAAAACCTGATTTATTCACCTTTTCAAGTATTTTAACAGTGTGTAGTAGTTTGGTGCATTTAGAACAAGGGGAAATGATACATGCTCAAACCATTAAAACCGGGTTCTTAGCTGATGTCATTGTAGGAACCGCGCTTGTTAACATGTACAATAAATGTGGAAACATTGAGAAAGCAAGTAAAGCCTTTCTAGAGATGTCTAATAGGACTTTGATATCTTGGACTTCTTTGATTACGGGTTTTGCACAACATGGCCAGTCTAAACAAGCGCTTGAGCTTTTTGAAGACATGATTCTTGCTGGAGTTAAGCCGAACCAAATCACTTTTGTCGGTGTTCTTTCAGCTTGTAGCCGGGCTGGAATGGTAGAAGAAGCACTTGGGTACTTTCAAATGATGCAAGAAGAGTTTAAGATTAAGCCTGTAATGGACCATTTTGCTTGCATTATCGATATGTTTGTAAGGTTGGGCCGAGTAGAGGATGCTTTTGATTTTGTGAAGAAGATGGATGTTGAGCCTAATGAGTTTATATGGTCGATTTTAATTTCCGGGTGTAGAAGACATGGAAATTTAGAATTAGGGTTTTATGCTGCAGAACGTTTACTTGAGCTTAAGCCGAAGGATATGGAGATTTATGTCTCCTTATTGAACATTTATCTCTCTGCGGAGAGATGGAAGGATGTTTCTAGAGTGAGAAAAATGATGAAAGAAGAGAAAGTTGGGAAGTTAAAGGATTGGAGTTGGATTAGCATCAAAGAAAAGGTTTATTCATTTAAACCTAATGACAAGTCACATTCTCAAAGTGTGGAGATGTACAAACTGTTGGAAGGTTTGGTTGAGAAGGTGAAGTGTTTGGGGTATGAATCTATTGAATGTTTAGAGGTAGTTGAAGAGGAAAACGAAGAAGCAGAGAAGGTGTTCGATTCTACAACATATCATAGTGAAAAGTTAGCCGTAGCTTTAGGGTTATTGAACTTGCCAGATTCTGCTCCTATTCGGGTTAATAAGAGTATTACTATGTGCCGGGATTGCCATAATTTTGTAAGGTTTGTATCGATAGAGATGGGTAGGGAGATTGTTGTTCGAGATAGTAAGCGGCTTCATAGATTTTTCAATGGGCAATGCTCTTGTGGGGATTCTTAG 2289 38.88 MASLPSVTISKTLKIDTEFRKQHSSTFPLTDKTSTITYRKNDVTTHLNGISEPKSLNFNEALSRIQEGMTIDPSYYVPLLQKCIDGNSAQEAQIIHTHIIKTGTHEDFFLMTFLVNVYTKCGIMENARKVFDKMPKRNVVAWTTLMTGYVHNSRPEFAVKVFLEMLEAGAYPTNYTLGILLNACSSLLSMELGKQIHAYIIKYHIDFDTSIGNSLSSFYSKCGNLESALKSFEQIREKNVISWTSVISACSDNGSSAKGLRIFTKMRSQGIEPNEYTLTSVLSLCCVMLSLKLGAQVHSLSIKLGYKSSLPIKNCVMYLYLKCGWINEARKLFEGMEKDMNLITWNAMIAGHAKMMETAIDDLSVHKSGNQALDIFLKLNRSGIKPDLFTFSSILTVCSSLVHLEQGEMIHAQTIKTGFLADVIVGTALVNMYNKCGNIEKASKAFLEMSNRTLISWTSLITGFAQHGQSKQALELFEDMILAGVKPNQITFVGVLSACSRAGMVEEALGYFQMMQEEFKIKPVMDHFACIIDMFVRLGRVEDAFDFVKKMDVEPNEFIWSILISGCRRHGNLELGFYAAERLLELKPKDMEIYVSLLNIYLSAERWKDVSRVRKMMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHSQSVEMYKLLEGLVEKVKCLGYESIECLEVVEEENEEAEKVFDSTTYHSEKLAVALGLLNLPDSAPIRVNKSITMCRDCHNFVRFVSIEMGREIVVRDSKRLHRFFNGQCSCGDS 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8564252 8566941 + Conep17aG0119000.1 Cone17ag1161 456638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1161 762 Pfam E motif 570 631 IPR046848 -
Cone17ag1161 762 Gene3D Tetratricopeptide repeat domain 191 289 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 FunFam Pentatricopeptide repeat-containing protein At2g34400 411 663 - -
Cone17ag1161 762 Gene3D Tetratricopeptide repeat domain 518 700 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 NCBIfam pentatricopeptide repeat 455 488 IPR002885 -
Cone17ag1161 762 NCBIfam pentatricopeptide repeat 490 523 IPR002885 -
Cone17ag1161 762 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Cone17ag1161 762 NCBIfam pentatricopeptide repeat 140 173 IPR002885 -
Cone17ag1161 762 SUPERFAMILY TPR-like 58 614 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 Pfam PPR repeat 530 551 IPR002885 -
Cone17ag1161 762 Pfam PPR repeat 427 451 IPR002885 -
Cone17ag1161 762 Pfam PPR repeat 314 338 IPR002885 -
Cone17ag1161 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Cone17ag1161 762 FunFam Pentatricopeptide repeat-containing protein At3g13880 194 293 - -
Cone17ag1161 762 Gene3D Tetratricopeptide repeat domain 290 356 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 Gene3D Tetratricopeptide repeat domain 57 190 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 Gene3D Tetratricopeptide repeat domain 357 517 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Cone17ag1161 762 PANTHER OS07G0578800 PROTEIN-RELATED 358 650 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone17ag1161 762 FunFam Pentatricopeptide repeat-containing protein 89 191 - -
Cone17ag1161 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 518 IPR002885 -
Cone17ag1161 762 SUPERFAMILY TPR-like 429 609 IPR011990 GO:0005515(InterPro)
Cone17ag1161 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Cone17ag1161 762 Pfam PPR repeat family 137 185 IPR002885 -
Cone17ag1161 762 Pfam PPR repeat family 238 286 IPR002885 -
Cone17ag1161 762 Pfam PPR repeat family 454 500 IPR002885 -
Cone17ag1161 762 Pfam DYW family of nucleic acid deaminases 681 761 IPR032867 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1161 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1161 Cone-Chr17:8564252 Cone5ag0556 Cone-Chr5:2379442 2.09E-147 dispersed
Cone20ag0413 Cone-Chr20:2006919 Cone17ag1161 Cone-Chr17:8564252 9.50E-98 dispersed
Cone17ag1161 Cone-Chr17:8564252 Cone5ag0673 Cone-Chr5:2880031 5.84E-151 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g554 . . Bda01g00921 . . . . . . . . . . . . . . Bhi04g00908 . . . . . Lcy13g1457 Cla08g01181 . . . . . . . . Cone17ag1161 . . . . . . . . . Bpe02g01166 . Bma01g01366 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01042 Csa02g02228 Chy03g01289 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010527 1 1 1 1 1 1 2 1 1 1 1 1 2 0 0 2 1 1 2 1 1 0 1 1 0 1 1 0 1 1 29