Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1162 ATGAAAAAGATGGTGGTGAGGAAAGTAGGGAAATATGAGGTAGGGAGGACGATCGGCGAAGGTACTTTTGCTAAGGTGAAGTTCGCTCAGAATACAGAGAGCGGCGAGAGTGTCGCCATGAAAATTCTCGATCGAAGCACCATAATCAAACACAAGATGGTTGATCAGATAAAGAGGGAGATATCTATTATGAAGCTTGTGAGACATCCTTATGTCGTTCGTCTTCAGGAGGTTCTGGCAAATCGTACTCAGATTTTTATAATCTTGGAGTTCATTACAGGTGGTGAATTGTTCGACAAAATAGTTCATCATGGACGTCTTAGTGAAGCGGAGTCCAGAAGATACTTTCAACAGCTTATTGATGGGGTAGATTATTGCCATAGCAACGGAGTTTACCACAGAGATTTAAAGCCTGAGAATCTTCTACTTGATTCTCAAGGTAATCTGAAGATTTCAGATTTTGGTCTTAGTGCATTGCCTGAACCTGGAGTAAGCCTCCTCCGAACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTACTCAGTCACAAGGGTTATAATGGTGCCGTGGCAGATGTTTGGTCCTGTGGCGTAATCCTGTATGTACTAATGGCAGGTTATCTTCCATTTGAGGATCTTGATCTCACGTCGCTCTACACTAAGATTGAGAAAGCTGATTTTTCATGTCCATCTTGGTTTCCCATGGGAGCAAAATCCTTAATTCATAGAATTTTAGACCCGAAGCCTGAAACTCGTATTACCATCCAGGAGATTAGAGATGACGAGTGGTTTAAGAAGAGTTATGTTCCCCCTAGACTACTTGTATATGAAGATGTAAACCTGGACGATGTAAATGCTGTTTTTGATGACCCTGAGGATCAGAGGTCTGATGAACAGTGCGGGAGTGAGGAATCAGGCCCTCTGACTTTGAATGCTTTTGACCTGATAACTCTATCTCAAGGCTTAAACCTTGCAACAATGTTTGATCGTGGCAAGGACTTGACCAAATATCAGACACGATTTGTCTCCCAGAAACCTGCAAAGGTTGTCTTATCAAGTTTGGAAGTTGTTGCACAGTCTATGGGTTTTAAGACTCATATTCGCAATTATAAGATGAGAGTAGAAGGCTTATCAGCAAATAAAACGTCGCATTTTTCAGTTATTCTTGAAATTTTCAACGTTGCTCCCACTTTTTACATGGTGGATATTCAGAAATCAGCTGGTGATGCTAGTGAGTTCCTCAAGTTTTATAAGAACTTTTGTAGCAATCTTGAGGACATCATATGGCAACCTCCTAATGATTCAAGCAAATCAAAAGTGTTCAAGACTAAGAGTAAATGGCGGTGA 1350 41.26 MKKMVVRKVGKYEVGRTIGEGTFAKVKFAQNTESGESVAMKILDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLQEVLANRTQIFIILEFITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSNGVYHRDLKPENLLLDSQGNLKISDFGLSALPEPGVSLLRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLMAGYLPFEDLDLTSLYTKIEKADFSCPSWFPMGAKSLIHRILDPKPETRITIQEIRDDEWFKKSYVPPRLLVYEDVNLDDVNAVFDDPEDQRSDEQCGSEESGPLTLNAFDLITLSQGLNLATMFDRGKDLTKYQTRFVSQKPAKVVLSSLEVVAQSMGFKTHIRNYKMRVEGLSANKTSHFSVILEIFNVAPTFYMVDIQKSAGDASEFLKFYKNFCSNLEDIIWQPPNDSSKSKVFKTKSKWR 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8567212 8570811 - Conep17aG0119100.1 Cone17ag1162 456639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1162 449 SMART serkin_6 12 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1162 449 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1162 449 Pfam NAF domain 308 366 IPR004041 GO:0007165(InterPro)
Cone17ag1162 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone17ag1162 449 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone17ag1162 449 SUPERFAMILY Protein kinase-like (PK-like) 9 282 IPR011009 -
Cone17ag1162 449 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Cone17ag1162 449 FunFam Non-specific serine/threonine protein kinase 5 306 - -
Cone17ag1162 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1162 449 FunFam Non-specific serine/threonine protein kinase 305 431 - -
Cone17ag1162 449 CDD CIPK_C 312 427 - -
Cone17ag1162 449 ProSitePatterns Protein kinases ATP-binding region signature. 18 50 IPR017441 GO:0005524(InterPro)
Cone17ag1162 449 Gene3D Kinase associated domain 1, KA1 306 431 - -
Cone17ag1162 449 Gene3D Transferase(Phosphotransferase) domain 1 3 305 - -
Cone17ag1162 449 ProSiteProfiles Protein kinase domain profile. 12 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1162 Cone-Chr17:8567212 Cone4ag0668 Cone-Chr4:3296691 3.48E-214 dispersed
Cone17ag1162 Cone-Chr17:8567212 Cone20ag0520 Cone-Chr20:2810772 1.14E-57 wgd
Cone17ag1162 Cone-Chr17:8567212 Cone20ag0568 Cone-Chr20:3230502 9.14e-314 wgd
Cone17ag1162 Cone-Chr17:8567212 Cone7ag1164 Cone-Chr7:8676600 5.20E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82278 PF02365 NAM 1.50E-18 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1162 - - - 0.0