Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1172 ATGAAGGGAGAATATCTAGAAACCAAGAGTGAATCCCAAAACATGTTCTCAAAGCTTCAACAGCAGCAGCAGCAGCAAGTTCAACTCCACCATAACAGCCCAAGCCCGCTCCAGACCCACTCGTTTACACTTCCATTCCAAGTCACCCCGACCCGCGAATGCCAAACCTCCGAGGACGACAACACCAGCCGCAGCAGTGGTCCGCAAAACATCACGGCTCAAAAACAGCCAAAGCTCGAACAACAGCAACACCATCACCATTCTGGCGACGGAGCTTCCATCGAAGTGGTCCGTCGCCCAAGAGGCAGACCGCCGGGATCCAAAAACCGGCCTAAACCACCCGTTATTATAACCCGAGACACCGAGTCCGCTATGAGCCCTTACATTCTAGAAGTCCCTGGAGGAAACGACGTGATTGAAGCCATCGCGCGCTTTTGCCGCCGCAAAAATATCGGCCTTTGCGTCCTCACCGGATCCGGCACCGTCGGAAACGTTACTCTCCGTCAACCGTCCACGACTCCAGGAGCCATGGTCACTTTCCACGGCCGTTTCGACATACTGTCCATTTGCGCTACTTTCATCCCTCACACGACGTCGTATCCTGTCCCTAGCGGCTTCACTATCTCCCTCGCCGGACCTCAAGGCCGGATCGTCGGAGGTGTAGTCTCCGGCGCCTTGATCGCAGTCGGAACGGTGTTCGTTATCGCCGCATCGTTCAACAATCCTTTGTATCATCGGTTACCAGCTGTTGACGAGATTAGAAATTCAGTTTCTGGTAGCGGCGGCGGTGGAGGTGCAGGCGAGGCTCAGTCTCCGCCGGAATCCGGCGGCGGTGAGAGTGGAGGACACGGTGCGTCTCATGAGTCAGGTGGAATGCCAATGTATAGCTGTCACATGTCATCCGATGTCATCTGGGCTCCTACAGCAAGACATCAACCACCGCCACCACCTCCCCCTCCGTATTAA 966 55.38 MKGEYLETKSESQNMFSKLQQQQQQQVQLHHNSPSPLQTHSFTLPFQVTPTRECQTSEDDNTSRSSGPQNITAQKQPKLEQQQHHHHSGDGASIEVVRRPRGRPPGSKNRPKPPVIITRDTESAMSPYILEVPGGNDVIEAIARFCRRKNIGLCVLTGSGTVGNVTLRQPSTTPGAMVTFHGRFDILSICATFIPHTTSYPVPSGFTISLAGPQGRIVGGVVSGALIAVGTVFVIAASFNNPLYHRLPAVDEIRNSVSGSGGGGGAGEAQSPPESGGGESGGHGASHESGGMPMYSCHMSSDVIWAPTARHQPPPPPPPPY 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8610336 8611301 - Conep17aG0120200.1 Cone17ag1172 456649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1172 321 MobiDBLite consensus disorder prediction 258 295 - -
Cone17ag1172 321 CDD DUF296 127 239 IPR005175 -
Cone17ag1172 321 MobiDBLite consensus disorder prediction 8 78 - -
Cone17ag1172 321 MobiDBLite consensus disorder prediction 1 116 - -
Cone17ag1172 321 Gene3D - 126 255 - -
Cone17ag1172 321 MobiDBLite consensus disorder prediction 79 97 - -
Cone17ag1172 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 63 295 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone17ag1172 321 FunFam AT-hook motif nuclear-localized protein 126 258 - -
Cone17ag1172 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 248 - -
Cone17ag1172 321 ProSiteProfiles PPC domain profile profile. 122 260 IPR005175 -
Cone17ag1172 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 127 240 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1172 Cone-Chr17:8610336 Cone8ag0353 Cone-Chr8:2019529 1.86E-53 dispersed
Cone17ag1172 Cone-Chr17:8610336 Cone20ag0558 Cone-Chr20:3120524 7.97E-174 wgd
Cone17ag1172 Cone-Chr17:8610336 Cone4ag1300 Cone-Chr4:10726530 3.25E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1172 - - - 0.0