Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1176 | ATGGCGAAGGTGAAGATAAAGAAGATTGACAACGTGACAGCAAGACAAGTGACCTTCTCCAAAAGAAGACGAGGCCTCTTCAAGAAAGCTCAAGAGCTATCTGTTCTTTGTGATGCTCAAGTTGCTCTCATCATCTTCTCTGCTACCAGAAAGCTCTTCGAGTATTCCAGTTCAAGTATGAATGATGTACTCTCAAGGTACCATTCACACTCTAGTAACCTCCTCAAAGAGCGAGACCAACCCTCCCTTGAGCTGCAGCTAGAGAATAGCATTAAGTACGCCAGACTGCAGAAGGAATTTGAAGATAAGGGCCACCAACTGAGGCAGATGAAGGGCGAGGATCTTCAAGGATTAGATATAGAGGAGTTGCAGAATCTGGAGAAAATGCTTGAAGCCGGTCTCGGCCGTGTGCTTCAGACCAAGGAGGAACGGGTTATGAGTGAGATCACCGCACTTGAAGCTAAGGGAGTTGAGTTGATTGAAGACAACACGAAACTAAAGGAGAAGGTGGAGATGATGTCGTCTATGGCAAAAGGAAAAGCAAAACAAGATCGTCATTATATGATTAACTGCAACATGGAATCCGACATCGCGTTGATACAACATGAAGCTGAAGGAATGTCGTCGGATCAATCGACTACCAATATCTGCAGCTACAACAGTGGCCCTTCCATTGAAGATGACTCTTCTGACACCTCTCTCAGATTAGCGCTTACGTTATTCAGATAA | 729 | 44.86 | MAKVKIKKIDNVTARQVTFSKRRRGLFKKAQELSVLCDAQVALIIFSATRKLFEYSSSSMNDVLSRYHSHSSNLLKERDQPSLELQLENSIKYARLQKEFEDKGHQLRQMKGEDLQGLDIEELQNLEKMLEAGLGRVLQTKEERVMSEITALEAKGVELIEDNTKLKEKVEMMSSMAKGKAKQDRHYMINCNMESDIALIQHEAEGMSSDQSTTNICSYNSGPSIEDDSSDTSLRLALTLFR | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8627228 | 8631917 | + | Conep17aG0120600.1 | Cone17ag1176 | 456653 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1176 | 242 | SUPERFAMILY | SRF-like | 3 | 73 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | Pfam | K-box region | 92 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cone17ag1176 | 242 | Gene3D | - | 12 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cone17ag1176 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 200 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone17ag1176 | 242 | FunFam | Transcription factor, MADS-box | 11 | 82 | - | - | |
Cone17ag1176 | 242 | Coils | Coil | 93 | 113 | - | - | |
Cone17ag1176 | 242 | CDD | MADS_MEF2_like | 3 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cone17ag1176 | 242 | PRINTS | MADS domain signature | 36 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | PRINTS | MADS domain signature | 1 | 21 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | PRINTS | MADS domain signature | 21 | 36 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 8 | 55 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone17ag1176 | 242 | SMART | madsneu2 | 1 | 58 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1176 | Cone-Chr17:8627228 | Cone7ag0856 | Cone-Chr7:6546748 | 4.09E-72 | dispersed | |
Cone12ag0994 | Cone-Chr12:8469668 | Cone17ag1176 | Cone-Chr17:8627228 | 2.26E-38 | wgd | |
Cone17ag1176 | Cone-Chr17:8627228 | Cone20ag0555 | Cone-Chr20:3087265 | 1.43E-124 | wgd | |
Cone17ag1176 | Cone-Chr17:8627228 | Cone4ag1281 | Cone-Chr4:10526697 | 1.14E-28 | wgd | |
Cone17ag1176 | Cone-Chr17:8627228 | Cone4ag1298 | Cone-Chr4:10714434 | 1.53E-72 | wgd | |
Cone17ag1176 | Cone-Chr17:8627228 | Cone7ag0871 | Cone-Chr7:6703827 | 3.47E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45094 | PF03629 | SASA | 2.30E-63 | CL0264 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1176 | - | - | - | 0.0 |