Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1176 ATGGCGAAGGTGAAGATAAAGAAGATTGACAACGTGACAGCAAGACAAGTGACCTTCTCCAAAAGAAGACGAGGCCTCTTCAAGAAAGCTCAAGAGCTATCTGTTCTTTGTGATGCTCAAGTTGCTCTCATCATCTTCTCTGCTACCAGAAAGCTCTTCGAGTATTCCAGTTCAAGTATGAATGATGTACTCTCAAGGTACCATTCACACTCTAGTAACCTCCTCAAAGAGCGAGACCAACCCTCCCTTGAGCTGCAGCTAGAGAATAGCATTAAGTACGCCAGACTGCAGAAGGAATTTGAAGATAAGGGCCACCAACTGAGGCAGATGAAGGGCGAGGATCTTCAAGGATTAGATATAGAGGAGTTGCAGAATCTGGAGAAAATGCTTGAAGCCGGTCTCGGCCGTGTGCTTCAGACCAAGGAGGAACGGGTTATGAGTGAGATCACCGCACTTGAAGCTAAGGGAGTTGAGTTGATTGAAGACAACACGAAACTAAAGGAGAAGGTGGAGATGATGTCGTCTATGGCAAAAGGAAAAGCAAAACAAGATCGTCATTATATGATTAACTGCAACATGGAATCCGACATCGCGTTGATACAACATGAAGCTGAAGGAATGTCGTCGGATCAATCGACTACCAATATCTGCAGCTACAACAGTGGCCCTTCCATTGAAGATGACTCTTCTGACACCTCTCTCAGATTAGCGCTTACGTTATTCAGATAA 729 44.86 MAKVKIKKIDNVTARQVTFSKRRRGLFKKAQELSVLCDAQVALIIFSATRKLFEYSSSSMNDVLSRYHSHSSNLLKERDQPSLELQLENSIKYARLQKEFEDKGHQLRQMKGEDLQGLDIEELQNLEKMLEAGLGRVLQTKEERVMSEITALEAKGVELIEDNTKLKEKVEMMSSMAKGKAKQDRHYMINCNMESDIALIQHEAEGMSSDQSTTNICSYNSGPSIEDDSSDTSLRLALTLFR 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8627228 8631917 + Conep17aG0120600.1 Cone17ag1176 456653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1176 242 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 Pfam K-box region 92 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone17ag1176 242 Gene3D - 12 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone17ag1176 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone17ag1176 242 FunFam Transcription factor, MADS-box 11 82 - -
Cone17ag1176 242 Coils Coil 93 113 - -
Cone17ag1176 242 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone17ag1176 242 PRINTS MADS domain signature 36 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 ProSiteProfiles MADS-box domain profile. 1 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone17ag1176 242 SMART madsneu2 1 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1176 Cone-Chr17:8627228 Cone7ag0856 Cone-Chr7:6546748 4.09E-72 dispersed
Cone12ag0994 Cone-Chr12:8469668 Cone17ag1176 Cone-Chr17:8627228 2.26E-38 wgd
Cone17ag1176 Cone-Chr17:8627228 Cone20ag0555 Cone-Chr20:3087265 1.43E-124 wgd
Cone17ag1176 Cone-Chr17:8627228 Cone4ag1281 Cone-Chr4:10526697 1.14E-28 wgd
Cone17ag1176 Cone-Chr17:8627228 Cone4ag1298 Cone-Chr4:10714434 1.53E-72 wgd
Cone17ag1176 Cone-Chr17:8627228 Cone7ag0871 Cone-Chr7:6703827 3.47E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45094 PF03629 SASA 2.30E-63 CL0264 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1176 - - - 0.0