Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1179 ATGACCTCTTATCTTCAGCCTCTACTGCTATGGCTTGGGGCAACACTTATCTGCAGAGCATTGGATCCAGTGGTTCTACCTTCAGAAGCTAGCCAAGTTGTGAAACAGCGACTTCTTACTTTTGTGCGGTCATTCTCAACAATACTTGCATTTGCTTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAATTCTTTAGTGAGACAAGTGAGTCTGATGATACAAGAAATATGGGATTTGATTTTGCTGGGAAAGCTGTTTATACAGCAGTGTGGGTTGCTGCTCTTTCATTGTTCATGGAGTTGCTTGGTTTCTCTACCCAAAAGTGGCTGACTGCTGGGGGTCTTGGCACTGTATTAATCACCCTGGCTGGCCGAGAGATATTTACAAATTTCCTTTCAAGCATAATGATCCATGCAACCAGGCCATTTGTTCTGAACGAGTGGATTCAAACAAAAATTGAGGGCTATGAAGTTTCTGGTACAGTTGAGCATGTTGGTTGGTGGTCTCCTACAATTATCCGAGGGGATGATCGTGAAGCAGTTCATATTCCAAATCACAAATTTACTGTTAATGTAGTGAGGAACCTTAGCCAGAAGACTCATTGGCGTATCAAGACCCATATTGCCATTAGCCACTTAGATGTCAATAAAATAAATATTGTTGTTGCAGATATGCGCAAAGTCTTGTCCAAAAATCCTCAAGTGGAACAGCAAAGGCTACATAGAAGAGTATTTCTAGAGAATATCAATCCTGAAAACCAGGCTCTTATGATATTGGTTTCTTGCTTTGTCAAAACTTCTCATTTCGAAGAATACCTGTGTGTAAAGGAAGCAATACTCCTAGATCTTCTAAGAGTAGTCAGCCATCACCGGGCCCGCCTTGCAACTCCCATCCGCACTGTTCAGAAAATATATAGTGAAGCCGACCTGGAAAACATACCCTTTGCTGACACTATTTTCACTCAATCTAGAGGAGCAACTAACCGTCCCTGGTTACTAATCGAACCTTCTTACAAAATCAATGGCGATGATAAATCCAAGGCTCCAACTCATTCCATACGTACAAATGACGAAAAGGATGCCATGCAAGAAGCAGCCTCGACATCCAACACCACTAAGGCCCCTGAAAAGAGCGGGCCCGCATCAAATCCCGACTTCAAAACAGATGATAGGGTTGTGGCAAAACCAACCTCCATGTCTGATACTTCAGACAAAAATAACTCTGAAATTCTGGGTTCAAGTAATGACGTAAAAGGAAATGTGGAGACTAAAAATTCCGAGGACACAAAATCTAGAGTGACTATGTCTGAAAAGCCCTCGGTTTCTTTCTCCAAATCTGGGAGTGAAAGAACAGACATTCCTTCTCCTAGCTTGCAGACCAAGCAAGAGGGAGAGAAGCCAAGTGCGTCACCTTCAATGGCCAGTAGACCTCCCTTAGAAGAGAATATAGTTCTAGAAGTTGCTTTAGAGGGCCCGAAACGTACACTTCTAATTCAAGAAGAAGAGATGGGTCCATCTATTTCGGAATCGCAAGAAGTATCGACTCATAGGAAGGAGCTGATTAGTAAGGACATTAAAGATGGTCAGGTTCCTAGTGCAATGCATAATGATTAG 1617 42.24 MTSYLQPLLLWLGATLICRALDPVVLPSEASQVVKQRLLTFVRSFSTILAFAYCLSSLIQQVQKFFSETSESDDTRNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLITLAGREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHIAISHLDVNKINIVVADMRKVLSKNPQVEQQRLHRRVFLENINPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADLENIPFADTIFTQSRGATNRPWLLIEPSYKINGDDKSKAPTHSIRTNDEKDAMQEAASTSNTTKAPEKSGPASNPDFKTDDRVVAKPTSMSDTSDKNNSEILGSSNDVKGNVETKNSEDTKSRVTMSEKPSVSFSKSGSERTDIPSPSLQTKQEGEKPSASPSMASRPPLEENIVLEVALEGPKRTLLIQEEEMGPSISESQEVSTHRKELISKDIKDGQVPSAMHND 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8645818 8650857 - Conep17aG0120900.1 Cone17ag1179 456656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1179 538 MobiDBLite consensus disorder prediction 436 470 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 363 379 - -
Cone17ag1179 538 SUPERFAMILY Sm-like ribonucleoproteins 128 198 IPR010920 -
Cone17ag1179 538 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 527 IPR045042 -
Cone17ag1179 538 Gene3D - 8 142 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 344 362 - -
Cone17ag1179 538 Gene3D - 144 199 IPR023408 -
Cone17ag1179 538 Pfam Mechanosensitive ion channel, beta-domain 128 198 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1179 538 MobiDBLite consensus disorder prediction 396 421 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 344 482 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 501 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1179 K22047 - - csv:101213477 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1179 Cone-Chr17:8645818 Cone9ag1443 Cone-Chr9:10712007 4.44E-224 dispersed
Cone17ag1179 Cone-Chr17:8645818 Cone6ag1528 Cone-Chr6:12026912 1.03E-224 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0438 . 110 535 Mechanosensitive Ion Channel Family AT4G00290 65.5 3.4e-157 552.4
Cone6ag1528 . 10 650 Mechanosensitive Ion Channel Family AT5G10490 63.0 2.3e-220 762.7
Cone9ag1443 . 10 652 Mechanosensitive Ion Channel Family AT5G10490 63.3 1.9e-219 759.6
Cone17ag1179 . 1 530 Mechanosensitive Ion Channel Family AT5G10490 64.1 1.2e-173 607.4
Cone9ag1443 . 6 636 Mechanosensitive Ion Channel Family AT1G58200 52.3 4.4e-179 625.5
Cone6ag1528 . 6 617 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.7e-175 613.6
Cone17ag1179 . 1 514 Mechanosensitive Ion Channel Family AT1G58200 61.1 1.4e-161 567.4
Cone10ag1228 . 54 951 Mechanosensitive Ion Channel Family AT1G53470 55.1 3.6e-258 888.6
Cone8ag1305 . 126 913 Mechanosensitive Ion Channel Family AT1G53470 51.7 1.2e-216 750.7
Cone12ag1250 . 38 666 Mechanosensitive Ion Channel Family AT1G53470 60.1 4.7e-210 728.8
Cone3ag0976 . 8 412 Mechanosensitive Ion Channel Family AT1G53470 55.1 8.9e-124 442.2
Cone10ag1228 . 52 949 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.8e-243 839.7
Cone12ag1250 . 15 666 Mechanosensitive Ion Channel Family AT3G14810 55.3 4.3e-200 695.7
Cone3ag0976 . 8 412 Mechanosensitive Ion Channel Family AT3G14810 52.6 5.9e-109 392.9
Cone10ag1228 . 54 951 Mechanosensitive Ion Channel Family AT1G78610 58.6 7.2e-280 960.7
Cone8ag1305 . 90 913 Mechanosensitive Ion Channel Family AT1G78610 54.9 8.6e-241 830.9
Cone12ag1250 . 3 666 Mechanosensitive Ion Channel Family AT1G78610 61.3 6.0e-226 781.6
Cone3ag0976 . 8 412 Mechanosensitive Ion Channel Family AT1G78610 51.9 9.2e-118 422.2
Cone10ag1228 . 189 951 Mechanosensitive Ion Channel Family AT2G17000 57.0 5.7e-229 791.6
Cone8ag1305 . 198 902 Mechanosensitive Ion Channel Family AT2G17000 57.9 2.7e-215 746.1
Cone12ag1250 . 4 655 Mechanosensitive Ion Channel Family AT2G17000 58.5 2.1e-207 719.9
Cone12ag1250 . 3 410 Mechanosensitive Ion Channel Family AT2G17010 61.3 5.9e-128 455.7
Cone4ag1693 . 63 713 Mechanosensitive Ion Channel Family AT5G19520 52.9 1.1e-183 641.0
Cone18ag0468 . 76 624 Mechanosensitive Ion Channel Family AT5G19520 50.3 9.7e-148 521.5
Cone11ag1110 . 63 586 Mechanosensitive Ion Channel Family AT5G19520 51.4 8.5e-136 481.9
Cone4ag1693 . 63 713 Mechanosensitive Ion Channel Family AT5G12080 55.2 1.0e-194 677.6
Cone4ag0813 . 71 767 Mechanosensitive Ion Channel Family AT5G12080 52.2 1.8e-194 676.8
Cone7ag0765 . 95 795 Mechanosensitive Ion Channel Family AT5G12080 51.1 5.7e-193 671.8
Cone18ag0468 . 53 653 Mechanosensitive Ion Channel Family AT5G12080 52.0 1.5e-161 567.4
Cone11ag1110 . 63 615 Mechanosensitive Ion Channel Family AT5G12080 50.4 1.5e-145 514.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71