Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1179 ATGACCTCTTATCTTCAGCCTCTACTGCTATGGCTTGGGGCAACACTTATCTGCAGAGCATTGGATCCAGTGGTTCTACCTTCAGAAGCTAGCCAAGTTGTGAAACAGCGACTTCTTACTTTTGTGCGGTCATTCTCAACAATACTTGCATTTGCTTATTGTCTATCAAGCTTGATTCAACAAGTACAAAAATTCTTTAGTGAGACAAGTGAGTCTGATGATACAAGAAATATGGGATTTGATTTTGCTGGGAAAGCTGTTTATACAGCAGTGTGGGTTGCTGCTCTTTCATTGTTCATGGAGTTGCTTGGTTTCTCTACCCAAAAGTGGCTGACTGCTGGGGGTCTTGGCACTGTATTAATCACCCTGGCTGGCCGAGAGATATTTACAAATTTCCTTTCAAGCATAATGATCCATGCAACCAGGCCATTTGTTCTGAACGAGTGGATTCAAACAAAAATTGAGGGCTATGAAGTTTCTGGTACAGTTGAGCATGTTGGTTGGTGGTCTCCTACAATTATCCGAGGGGATGATCGTGAAGCAGTTCATATTCCAAATCACAAATTTACTGTTAATGTAGTGAGGAACCTTAGCCAGAAGACTCATTGGCGTATCAAGACCCATATTGCCATTAGCCACTTAGATGTCAATAAAATAAATATTGTTGTTGCAGATATGCGCAAAGTCTTGTCCAAAAATCCTCAAGTGGAACAGCAAAGGCTACATAGAAGAGTATTTCTAGAGAATATCAATCCTGAAAACCAGGCTCTTATGATATTGGTTTCTTGCTTTGTCAAAACTTCTCATTTCGAAGAATACCTGTGTGTAAAGGAAGCAATACTCCTAGATCTTCTAAGAGTAGTCAGCCATCACCGGGCCCGCCTTGCAACTCCCATCCGCACTGTTCAGAAAATATATAGTGAAGCCGACCTGGAAAACATACCCTTTGCTGACACTATTTTCACTCAATCTAGAGGAGCAACTAACCGTCCCTGGTTACTAATCGAACCTTCTTACAAAATCAATGGCGATGATAAATCCAAGGCTCCAACTCATTCCATACGTACAAATGACGAAAAGGATGCCATGCAAGAAGCAGCCTCGACATCCAACACCACTAAGGCCCCTGAAAAGAGCGGGCCCGCATCAAATCCCGACTTCAAAACAGATGATAGGGTTGTGGCAAAACCAACCTCCATGTCTGATACTTCAGACAAAAATAACTCTGAAATTCTGGGTTCAAGTAATGACGTAAAAGGAAATGTGGAGACTAAAAATTCCGAGGACACAAAATCTAGAGTGACTATGTCTGAAAAGCCCTCGGTTTCTTTCTCCAAATCTGGGAGTGAAAGAACAGACATTCCTTCTCCTAGCTTGCAGACCAAGCAAGAGGGAGAGAAGCCAAGTGCGTCACCTTCAATGGCCAGTAGACCTCCCTTAGAAGAGAATATAGTTCTAGAAGTTGCTTTAGAGGGCCCGAAACGTACACTTCTAATTCAAGAAGAAGAGATGGGTCCATCTATTTCGGAATCGCAAGAAGTATCGACTCATAGGAAGGAGCTGATTAGTAAGGACATTAAAGATGGTCAGGTTCCTAGTGCAATGCATAATGATTAG 1617 42.24 MTSYLQPLLLWLGATLICRALDPVVLPSEASQVVKQRLLTFVRSFSTILAFAYCLSSLIQQVQKFFSETSESDDTRNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWLTAGGLGTVLITLAGREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHIAISHLDVNKINIVVADMRKVLSKNPQVEQQRLHRRVFLENINPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADLENIPFADTIFTQSRGATNRPWLLIEPSYKINGDDKSKAPTHSIRTNDEKDAMQEAASTSNTTKAPEKSGPASNPDFKTDDRVVAKPTSMSDTSDKNNSEILGSSNDVKGNVETKNSEDTKSRVTMSEKPSVSFSKSGSERTDIPSPSLQTKQEGEKPSASPSMASRPPLEENIVLEVALEGPKRTLLIQEEEMGPSISESQEVSTHRKELISKDIKDGQVPSAMHND 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8645818 8650857 - Conep17aG0120900.1 Cone17ag1179 456656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1179 538 MobiDBLite consensus disorder prediction 436 470 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 363 379 - -
Cone17ag1179 538 SUPERFAMILY Sm-like ribonucleoproteins 128 198 IPR010920 -
Cone17ag1179 538 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 527 IPR045042 -
Cone17ag1179 538 Gene3D - 8 142 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 344 362 - -
Cone17ag1179 538 Gene3D - 144 199 IPR023408 -
Cone17ag1179 538 Pfam Mechanosensitive ion channel, beta-domain 128 198 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone17ag1179 538 MobiDBLite consensus disorder prediction 396 421 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 344 482 - -
Cone17ag1179 538 MobiDBLite consensus disorder prediction 501 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1179 Cone-Chr17:8645818 Cone9ag1443 Cone-Chr9:10712007 4.44E-224 dispersed
Cone17ag1179 Cone-Chr17:8645818 Cone6ag1528 Cone-Chr6:12026912 1.03E-224 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1179 K22047 - csv:101213477 748.429