Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1183 ATGTACGGCCACGCCCAATCCGTCGATACCTCCGATCAAATCCCCTCCGGTGACGGAAACAACGGCGATTCCGCCTGCCATGACTCTATCGACGGTAACGCTCTCATTGGTTACGATGCTCACGTCCTCGAGGACGGTGCCGGTGGAGTCGAAGATGTGAGTCATGACGCCATTTATGTCTCCGCCGACGGAGCTGGCTCTGACATTGTTTCCCAACGCAGCGACGGTACCAGCCAGCTGACGCTTTCTTTTCGCGGTCAAGTTTATGTTTTTGACACCGTCACGCCTGATAAGGTTCAAGCTGTGTTACTTTTACTGGGAGGATGCGAGATGACTTCAGGTCAGGAAGATCAGAATCAGAGGATGCCTATGGAACTTCCCTTACGCTGTAGTCAGCCACATAGAGCGGCCTCATTAAATAGGTTTCGCCAGAAGAGAAAAGAGCGTTGCTTTGATAAGAAAGTTCGATATAGTGTCCGGCAAGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACATCTGCTAAGAAGCCTGATGGGACATATGGATGGAATAACGTCCAGGAGGCAGGTCAGGATGAGAGCCCACCAGAAACCTTATGCACTCATTGTGGCACAAGTTCGAAAGTTACTCCAATGATGCGACGGGGACCATCTGGTCCAAGGTCTCTTTGTAATGCTTGTGGACTCTTCTGGGCAAACAGGGGAACATTAAGAGATCTTTCAAAGAGAAATCAGGACAATACTCTGACCCAATCTGAGCAAGCTGGAGGTGAGGCTAACGATTCAGGTTGCAGAACAGCCATCCATCACCGCAACAAACTCAAAACTTTCTCCAATGGTGATAACTCAACTTTGATGGCTGAGCATTAA 879 49.26 MYGHAQSVDTSDQIPSGDGNNGDSACHDSIDGNALIGYDAHVLEDGAGGVEDVSHDAIYVSADGAGSDIVSQRSDGTSQLTLSFRGQVYVFDTVTPDKVQAVLLLLGGCEMTSGQEDQNQRMPMELPLRCSQPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGTYGWNNVQEAGQDESPPETLCTHCGTSSKVTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNTLTQSEQAGGEANDSGCRTAIHHRNKLKTFSNGDNSTLMAEH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8671190 8674227 + Conep17aG0121300.1 Cone17ag1183 456660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1183 292 MobiDBLite consensus disorder prediction 1 26 - -
Cone17ag1183 292 Pfam tify domain 75 107 IPR010399 -
Cone17ag1183 292 Pfam CCT motif 135 177 IPR010402 GO:0005515(InterPro)
Cone17ag1183 292 PANTHER GATA TRANSCRIPTION FACTOR 28 31 284 IPR045280 GO:0006355(InterPro)
Cone17ag1183 292 MobiDBLite consensus disorder prediction 245 262 - -
Cone17ag1183 292 MobiDBLite consensus disorder prediction 245 267 - -
Cone17ag1183 292 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Cone17ag1183 292 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Cone17ag1183 292 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Cone17ag1183 292 Gene3D - 194 257 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone17ag1183 292 CDD ZnF_GATA 203 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 SMART tify_2 73 108 IPR010399 -
Cone17ag1183 292 SMART GATA_3 197 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1183 Cone-Chr17:8671190 Cone3ag1079 Cone-Chr3:29455861 4.63E-65 dispersed
Cone17ag1183 Cone-Chr17:8671190 Cone17ag1184 Cone-Chr17:8674989 2.99E-64 tandem
Cone17ag1183 Cone-Chr17:8671190 Cone20ag0548 Cone-Chr20:3052702 1.09E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45096 PF04788 DUF620 2.70E-118 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1183 - - - 0.0