Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1183 ATGTACGGCCACGCCCAATCCGTCGATACCTCCGATCAAATCCCCTCCGGTGACGGAAACAACGGCGATTCCGCCTGCCATGACTCTATCGACGGTAACGCTCTCATTGGTTACGATGCTCACGTCCTCGAGGACGGTGCCGGTGGAGTCGAAGATGTGAGTCATGACGCCATTTATGTCTCCGCCGACGGAGCTGGCTCTGACATTGTTTCCCAACGCAGCGACGGTACCAGCCAGCTGACGCTTTCTTTTCGCGGTCAAGTTTATGTTTTTGACACCGTCACGCCTGATAAGGTTCAAGCTGTGTTACTTTTACTGGGAGGATGCGAGATGACTTCAGGTCAGGAAGATCAGAATCAGAGGATGCCTATGGAACTTCCCTTACGCTGTAGTCAGCCACATAGAGCGGCCTCATTAAATAGGTTTCGCCAGAAGAGAAAAGAGCGTTGCTTTGATAAGAAAGTTCGATATAGTGTCCGGCAAGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACATCTGCTAAGAAGCCTGATGGGACATATGGATGGAATAACGTCCAGGAGGCAGGTCAGGATGAGAGCCCACCAGAAACCTTATGCACTCATTGTGGCACAAGTTCGAAAGTTACTCCAATGATGCGACGGGGACCATCTGGTCCAAGGTCTCTTTGTAATGCTTGTGGACTCTTCTGGGCAAACAGGGGAACATTAAGAGATCTTTCAAAGAGAAATCAGGACAATACTCTGACCCAATCTGAGCAAGCTGGAGGTGAGGCTAACGATTCAGGTTGCAGAACAGCCATCCATCACCGCAACAAACTCAAAACTTTCTCCAATGGTGATAACTCAACTTTGATGGCTGAGCATTAA 879 49.26 MYGHAQSVDTSDQIPSGDGNNGDSACHDSIDGNALIGYDAHVLEDGAGGVEDVSHDAIYVSADGAGSDIVSQRSDGTSQLTLSFRGQVYVFDTVTPDKVQAVLLLLGGCEMTSGQEDQNQRMPMELPLRCSQPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGTYGWNNVQEAGQDESPPETLCTHCGTSSKVTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDNTLTQSEQAGGEANDSGCRTAIHHRNKLKTFSNGDNSTLMAEH 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8671190 8674227 + Conep17aG0121300.1 Cone17ag1183 456660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1183 292 MobiDBLite consensus disorder prediction 1 26 - -
Cone17ag1183 292 Pfam tify domain 75 107 IPR010399 -
Cone17ag1183 292 Pfam CCT motif 135 177 IPR010402 GO:0005515(InterPro)
Cone17ag1183 292 PANTHER GATA TRANSCRIPTION FACTOR 28 31 284 IPR045280 GO:0006355(InterPro)
Cone17ag1183 292 MobiDBLite consensus disorder prediction 245 262 - -
Cone17ag1183 292 MobiDBLite consensus disorder prediction 245 267 - -
Cone17ag1183 292 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Cone17ag1183 292 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Cone17ag1183 292 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Cone17ag1183 292 Gene3D - 194 257 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone17ag1183 292 CDD ZnF_GATA 203 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1183 292 SMART tify_2 73 108 IPR010399 -
Cone17ag1183 292 SMART GATA_3 197 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1183 Cone-Chr17:8671190 Cone3ag1079 Cone-Chr3:29455861 4.63E-65 dispersed
Cone17ag1183 Cone-Chr17:8671190 Cone17ag1184 Cone-Chr17:8674989 2.99E-64 tandem
Cone17ag1183 Cone-Chr17:8671190 Cone20ag0548 Cone-Chr20:3052702 1.09E-195 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone15ag0833 . 1 181 Tify Gene Family AT4G14713 53.9 7.1e-46 181.4
Cone14ag0872 . 1 190 Tify Gene Family AT4G14713 51.8 2.3e-44 176.4
Cone15ag0833 . 1 287 Tify Gene Family AT4G14720 51.0 1.7e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45096 PF04788 DUF620 2.70E-118 No_clan Cone TF