Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1184 ATGTCAGCTGCGAATCCTCAGCCACTACAGGCGCGTCCCTTCGAGGATAGCGTCCGAGGTCCTATACGAATTGACGACGACGACGATGAGTACGAAGATGGTGCCGAGGGTACTGGTGATGATGTCATGGATGATGTCGGGGAGGCTCATATGAATTCGGTGAGCATAGCTAACCATGGAGGTGTGGTTGTGGCGTCTAGGACTAGTGAGCTAACGCTCTCTTTCGAAGGCGAGGTGTACGTTTTCCCTGCTGTTACTCCTGAAAAGGTGCAGGCAGTCCTGCTGCTTCTGGGAGGGCGTGATATGCCATCTGGGGTACCTACAATTGGAGTAGCTTATGACCAAAATAACAGGGGTGTGGGCGATGTCCCAAAGCACTCAAACCTGTCACGAAGAATAGCCTCCTTGGTCAGGTTCCGTGAAAAGCGGAAGGAGAGATGTTTTGAAAAGAAAATTAGGTACTCTATACGAAAAGAGGTTGCACAAAGGATGCACCGTAAAAATGGGCAGTTTGCATCTTTGAAAGAAAGTTCAGGTGCTTCGAGCTGGGACTCTACCCAGACTTTTCCTCAAGATGGCAGTCCTATTCCAGAAACTGTTTTGAGAAGATGCCAACATTGTGGAGTTGGTGAAAATAATACTCCTGCAATGCGCCGTGGGCCACGTGGGCCAAGGACATTATGTAATGCTTGCGGTCTGATGTGGGCAAATAAGGGAACTTTAAGAGATCTCAGCAAGAGTGGAAGGAATATTTCTGCAGAGCATACTGAACCGGAAACCCCAATGGATATCAAACCGTCAATAATGGAAGGAGAATCATCTGGAAACCAAGATGAACATGGGATGCCCGAGGATCCTGGTGGTAGGACTGTAATTGAAGGCTCCAGTATTCCTTCTGTCATTCCTGATGAGGAAGATTTTCGTGAAACGACTGAAGATCTTAGAAACTCTCTACCCATGCAAATTGTCAGTACTTCAGCTAACGATGATGATCAGTTGAACTTGCCAATCCCTCAGACTCAGAGATAG 1029 47.62 MSAANPQPLQARPFEDSVRGPIRIDDDDDEYEDGAEGTGDDVMDDVGEAHMNSVSIANHGGVVVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDMPSGVPTIGVAYDQNNRGVGDVPKHSNLSRRIASLVRFREKRKERCFEKKIRYSIRKEVAQRMHRKNGQFASLKESSGASSWDSTQTFPQDGSPIPETVLRRCQHCGVGENNTPAMRRGPRGPRTLCNACGLMWANKGTLRDLSKSGRNISAEHTEPETPMDIKPSIMEGESSGNQDEHGMPEDPGGRTVIEGSSIPSVIPDEEDFRETTEDLRNSLPMQIVSTSANDDDQLNLPIPQTQR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8674989 8679057 + Conep17aG0121400.1 Cone17ag1184 456661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1184 342 CDD ZnF_GATA 203 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 246 342 - -
Cone17ag1184 342 SMART tify_2 64 99 IPR010399 -
Cone17ag1184 342 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Cone17ag1184 342 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 171 194 - -
Cone17ag1184 342 MobiDBLite consensus disorder prediction 170 197 - -
Cone17ag1184 342 Pfam CCT motif 132 173 IPR010402 GO:0005515(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 26 40 - -
Cone17ag1184 342 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 314 342 - -
Cone17ag1184 342 ProSiteProfiles GATA-type zinc finger domain profile. 198 254 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 Gene3D - 198 258 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone17ag1184 342 Pfam tify domain 67 98 IPR010399 -
Cone17ag1184 342 PANTHER GATA TRANSCRIPTION FACTOR 28 16 325 IPR045280 GO:0006355(InterPro)
Cone17ag1184 342 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515(InterPro)
Cone17ag1184 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 252 - -
Cone17ag1184 342 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0956 Cone-Chr10:5062326 Cone17ag1184 Cone-Chr17:8674989 3.08E-31 dispersed
Cone17ag1184 Cone-Chr17:8674989 Cone20ag0548 Cone-Chr20:3052702 4.75E-62 dispersed
Cone17ag1183 Cone-Chr17:8671190 Cone17ag1184 Cone-Chr17:8674989 2.99E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45097 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1184 - - - 0.0