Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1184 ATGTCAGCTGCGAATCCTCAGCCACTACAGGCGCGTCCCTTCGAGGATAGCGTCCGAGGTCCTATACGAATTGACGACGACGACGATGAGTACGAAGATGGTGCCGAGGGTACTGGTGATGATGTCATGGATGATGTCGGGGAGGCTCATATGAATTCGGTGAGCATAGCTAACCATGGAGGTGTGGTTGTGGCGTCTAGGACTAGTGAGCTAACGCTCTCTTTCGAAGGCGAGGTGTACGTTTTCCCTGCTGTTACTCCTGAAAAGGTGCAGGCAGTCCTGCTGCTTCTGGGAGGGCGTGATATGCCATCTGGGGTACCTACAATTGGAGTAGCTTATGACCAAAATAACAGGGGTGTGGGCGATGTCCCAAAGCACTCAAACCTGTCACGAAGAATAGCCTCCTTGGTCAGGTTCCGTGAAAAGCGGAAGGAGAGATGTTTTGAAAAGAAAATTAGGTACTCTATACGAAAAGAGGTTGCACAAAGGATGCACCGTAAAAATGGGCAGTTTGCATCTTTGAAAGAAAGTTCAGGTGCTTCGAGCTGGGACTCTACCCAGACTTTTCCTCAAGATGGCAGTCCTATTCCAGAAACTGTTTTGAGAAGATGCCAACATTGTGGAGTTGGTGAAAATAATACTCCTGCAATGCGCCGTGGGCCACGTGGGCCAAGGACATTATGTAATGCTTGCGGTCTGATGTGGGCAAATAAGGGAACTTTAAGAGATCTCAGCAAGAGTGGAAGGAATATTTCTGCAGAGCATACTGAACCGGAAACCCCAATGGATATCAAACCGTCAATAATGGAAGGAGAATCATCTGGAAACCAAGATGAACATGGGATGCCCGAGGATCCTGGTGGTAGGACTGTAATTGAAGGCTCCAGTATTCCTTCTGTCATTCCTGATGAGGAAGATTTTCGTGAAACGACTGAAGATCTTAGAAACTCTCTACCCATGCAAATTGTCAGTACTTCAGCTAACGATGATGATCAGTTGAACTTGCCAATCCCTCAGACTCAGAGATAG 1029 47.62 MSAANPQPLQARPFEDSVRGPIRIDDDDDEYEDGAEGTGDDVMDDVGEAHMNSVSIANHGGVVVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDMPSGVPTIGVAYDQNNRGVGDVPKHSNLSRRIASLVRFREKRKERCFEKKIRYSIRKEVAQRMHRKNGQFASLKESSGASSWDSTQTFPQDGSPIPETVLRRCQHCGVGENNTPAMRRGPRGPRTLCNACGLMWANKGTLRDLSKSGRNISAEHTEPETPMDIKPSIMEGESSGNQDEHGMPEDPGGRTVIEGSSIPSVIPDEEDFRETTEDLRNSLPMQIVSTSANDDDQLNLPIPQTQR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8674989 8679057 + Conep17aG0121400.1 Cone17ag1184 456661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1184 342 CDD ZnF_GATA 203 246 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 246 342 - -
Cone17ag1184 342 SMART tify_2 64 99 IPR010399 -
Cone17ag1184 342 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Cone17ag1184 342 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 171 194 - -
Cone17ag1184 342 MobiDBLite consensus disorder prediction 170 197 - -
Cone17ag1184 342 Pfam CCT motif 132 173 IPR010402 GO:0005515(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 26 40 - -
Cone17ag1184 342 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 MobiDBLite consensus disorder prediction 314 342 - -
Cone17ag1184 342 ProSiteProfiles GATA-type zinc finger domain profile. 198 254 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone17ag1184 342 Gene3D - 198 258 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone17ag1184 342 Pfam tify domain 67 98 IPR010399 -
Cone17ag1184 342 PANTHER GATA TRANSCRIPTION FACTOR 28 16 325 IPR045280 GO:0006355(InterPro)
Cone17ag1184 342 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515(InterPro)
Cone17ag1184 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 252 - -
Cone17ag1184 342 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1184 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0956 Cone-Chr10:5062326 Cone17ag1184 Cone-Chr17:8674989 3.08E-31 dispersed
Cone17ag1184 Cone-Chr17:8674989 Cone20ag0548 Cone-Chr20:3052702 4.75E-62 dispersed
Cone17ag1183 Cone-Chr17:8671190 Cone17ag1184 Cone-Chr17:8674989 2.99E-64 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone17ag1184 . 28 247 Tify Gene Family AT1G51600 50.4 6.9e-52 201.8
Cone3ag1079 . 76 250 Tify Gene Family AT1G51600 63.0 1.3e-50 197.6
Cone17ag1183 . 68 245 Tify Gene Family AT1G51600 56.2 1.0e-47 188.0
Cone20ag0548 . 71 248 Tify Gene Family AT1G51600 56.2 1.4e-47 187.6
Cone15ag0833 . 1 181 Tify Gene Family AT4G14713 53.9 7.1e-46 181.4
Cone14ag0872 . 1 190 Tify Gene Family AT4G14713 51.8 2.3e-44 176.4
Cone15ag0833 . 1 287 Tify Gene Family AT4G14720 51.0 1.7e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45097 None None None None Cone TF