Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1186 ATGGCCCCTCTAGGTGTCCAATTACAAATCAGAGAACGTCATGTGACAATGGATAATGGCATAGTACAGGTAACGTTATCAAACCCGGAAGGAATAGTCACCGAAATTCGATACAACGACATGGACAACTTGCTCGAGATTCTCAACGACGAAACAAACAGAGGTTATTGGGACCTTGTCTGGAGCTCTCCTACGAGTACCACCACATCTGGAATATTTGAAGTAATAAAAGGCACTAGTTTTAGAGTTGTAGTTGAGACTGAAGACCAGGTGGAGCTTTCATTCTCGAGAACATGGGATCCCTCCCAACATGACAAGCTCTCACCCTTAAATATAGACAAAAGGTTTATATTGCTTCGTGGTTGCTCTGGATTCTACTCCTATGCTATTTACGAACACTTGAAGGAATGGCCAGCTTTCAATCTGGACGAGACCAGGATTGCTTTTAAACTCAGAAAAGACAAGTTCCACTATATGGCGGTTGGAGATGACAGACAGAGAAACATGCCATTGCCGGATGATCGGTTGCCTCCTAGAGGCAAGGCGCTGGCCTACCCTGAGGCAGTGCTTCTAGTTGACCCTGTTGAGCCTGAGCTTAAAGGAGAGGTAGATGATAAGTACCAATATTCTTGTAATAACGAGGATAATCGGGTTCACGGGTGGGTATCCAATACGGACCCACAAAAGCCTGCAATCGGATTCTGGCAAATCACACCCAGTAACGAGTTCCGATCAGGCGGACCCCTTAAACAGAACCTGACTTCACATGTGGGTCCCACCACCCTCGCGATGTTTCTCAGTGCTCACTATTCAGGGGAGGATTTGGTACCAAAGTTTAGAGAAGGAGAGGCATGGAAGAAGGTGTTTGGTCCTGTATTTATGTACTTTAATTCTTCATACATCGGAGACGATCGTATCGATCCACTTCTTCTCTGGGAAGATGCTAAAATACAGATGATAATCGAAACTCAAAGTTGGCCTTATTTCTTTCCCGATTCCGATGATTTTCAAAAATCTGATCAAAGGGGTAATCTATACGGTAGATTACTAGTCCAAGATAGCTACCTTAGCATGGAGTGCATACCAGCAGATGGCGCATACGTTGGCTTGGCCCCACCCGGCGATGTGGGGTCATGGCAAAGAGAATGCAAGGATTATCAGTTTTGGACTAGAGCAGATTCAGATGGTTATTTCTGCATTACTAATATACGCACCGGTGATTATAATCTTTATGCTTGGGTCCCTGGTTTTGTTGGAGATTACAAATACGATGATGTTCTTATTAACATAACAGAAGGTTGTGTTATTGATACCGGTGATCTTATATACAAGCCTCCGAGAGATGGACCCACATTGTGGGAAATAGGCATTCCCGATCGTTCGGCGGCAGAGTTTTATGTTCCTGATCCTAACCCTAATTACGTGAATAAACTCTATGTTAATCATCCCGACAGGTTTAGGCAGTATGGACTGTGGGAAAGATATGCAGAACTATACCCTGATAACGATTTGGTATATACCGTCGGTGTCAGTGACTACACTAATGATTGGTTCTTCGCTCAAGTTACAAGGAAGAAATTAGATGATAAAACATATCAAGGAACAACATGGCAAATCAAGTTTAAACTAGATTCAGTGGACCAGATTGGAACTTACAAACTTCGAATAGCATTGGCTTCAGCTACACTTTCTGAATTACAGGTTAGGGTGAATGATTCGAAATCAAGTCCAATATTTTCAAGTGGGCTAATAGGGAGGGACAACTCAATCGCCAGGCATGGAATTCACGGTCTCTATTGGTTTTATAGTGTCGGAATATCCGGCAGCCGACTTGTTGCCGGAGATGATAATTATAATACCATCTATTTGACTCAGCCAAGAAGTAGTAGCCCGTTCCAAGGGATTATGTACGACTACATTCGTCTTGAAGCTCCTAATCAACCTTCTATTGCTTCTTGA 1959 43.29 MAPLGVQLQIRERHVTMDNGIVQVTLSNPEGIVTEIRYNDMDNLLEILNDETNRGYWDLVWSSPTSTTTSGIFEVIKGTSFRVVVETEDQVELSFSRTWDPSQHDKLSPLNIDKRFILLRGCSGFYSYAIYEHLKEWPAFNLDETRIAFKLRKDKFHYMAVGDDRQRNMPLPDDRLPPRGKALAYPEAVLLVDPVEPELKGEVDDKYQYSCNNEDNRVHGWVSNTDPQKPAIGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAMFLSAHYSGEDLVPKFREGEAWKKVFGPVFMYFNSSYIGDDRIDPLLLWEDAKIQMIIETQSWPYFFPDSDDFQKSDQRGNLYGRLLVQDSYLSMECIPADGAYVGLAPPGDVGSWQRECKDYQFWTRADSDGYFCITNIRTGDYNLYAWVPGFVGDYKYDDVLINITEGCVIDTGDLIYKPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYVNKLYVNHPDRFRQYGLWERYAELYPDNDLVYTVGVSDYTNDWFFAQVTRKKLDDKTYQGTTWQIKFKLDSVDQIGTYKLRIALASATLSELQVRVNDSKSSPIFSSGLIGRDNSIARHGIHGLYWFYSVGISGSRLVAGDDNYNTIYLTQPRSSSPFQGIMYDYIRLEAPNQPSIAS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8698186 8701552 - Conep17aG0121600.1 Cone17ag1186 456663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1186 652 Pfam Polysaccharide lyase family 4, domain III 451 642 IPR029411 -
Cone17ag1186 652 FunFam Rhamnogalacturonate lyase B 338 438 - -
Cone17ag1186 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 646 IPR051850 -
Cone17ag1186 652 Gene3D - 341 435 - -
Cone17ag1186 652 Pfam Polysaccharide lyase family 4, domain II 364 436 IPR029413 -
Cone17ag1186 652 Gene3D - 449 643 - -
Cone17ag1186 652 SUPERFAMILY Galactose-binding domain-like 448 643 IPR008979 -
Cone17ag1186 652 Gene3D - 6 317 IPR014718 GO:0030246(InterPro)
Cone17ag1186 652 SUPERFAMILY Starch-binding domain-like 342 431 IPR013784 GO:0030246(InterPro)
Cone17ag1186 652 CDD RGL4_C 453 643 - -
Cone17ag1186 652 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
Cone17ag1186 652 SUPERFAMILY Galactose mutarotase-like 19 303 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cone17ag1186 652 CDD RGL4_M 341 441 IPR029413 -
Cone17ag1186 652 CDD RGL4_N 13 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0380 Cone-Chr16:6163787 Cone17ag1186 Cone-Chr17:8698186 1.36E-140 dispersed
Cone17ag1186 Cone-Chr17:8698186 Cone7ag0869 Cone-Chr7:6678678 0 dispersed
Cone17ag1186 Cone-Chr17:8698186 Cone4ag1283 Cone-Chr4:10549015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1186 K18195 - gmx:100814721 1072.77