Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1189 ATGGTGGCACCCAGCTCTGACTGTGCTGTACCGAGCCTCCTATGCGCAGAAGACGAGGCTATTTTCGACGATAACAATGAATATGTGGGCAATATGGAGTTTGATCATCAACATAGAAAGAATCGAATCCATGATCAAAACATAAACTTTGATCGCAAAGACGAAGAAGAAGGGTTGCTATTGTTGAATGAAGAGTGCTTAGGACTGTTGTTTGAGAAGGAAGATCAATATTTGCCTTCTCCCGATTACTTGAGGAGATTGAAAAATGGGGATTTGGACTTTGCCTCTAGAAAAGATGCTCTTGATTGGATTTCTAAGGCCAATGCTCATTTCTGCTTCGGCCCTCTCTGCTCTTACTTGGCCATAAACTACTTGGACCGCTTCCTTTCGGCTTATGAACTACCTAAAGGCAATGCTTGGACAATGCAACTACTAGCCGTAGCATGTTTATCTCTTGCGGCCAAAAGCGACGAAACAGAAGTCCCCTTGCCCTTAGACTTACAGGTGGATGGATCGAAATTTGTGTTTGAAGCTAGAACTATACAAAGAATGGAGCTTTTAGTGTTAAGCACATTACGATGGAGAATGCAAGCAATCACTCCTTTCTCCTTCATAGACCATTTTCTTTGCATTATTTCTGATAATGCTGATCAAAGCTTCTTTATCCGGATCTTGAGTTTCCGATCGATTCAACTGATTTTAAGTACGATTAAGAGGGTTGACTTTCTAGAATTCAAACCTTCCGTTATTGCTGCGGCCATAGCCATATCAATCGTACAAGAAACTCAACAACTACATATAGAGAAATCAATCTCTCTTCTTATCCAACATAATGAAAAGGAGAGAGCAGTGAAGTGCATGAATTTGATCAAGGAGTTTGCATTGATTAGTGAGTCCATGAAGGATGGAAGAAGTACAGGATTGGGTTTGAATTCTGTTCCGAGGAGTCCAAGTGGGGTATTGGACATAGGTGGGTGTATGAGCTATACCAATACAAGTGATGAACATAATAATACAGTTGGATCATGTGCTAATTCTTGTCATTATAGCTCAGGAGTGAAGAGGAGAAGGCTAAATAGACCCTGTTGTGAAGTATGA 1098 40.89 MVAPSSDCAVPSLLCAEDEAIFDDNNEYVGNMEFDHQHRKNRIHDQNINFDRKDEEEGLLLLNEECLGLLFEKEDQYLPSPDYLRRLKNGDLDFASRKDALDWISKANAHFCFGPLCSYLAINYLDRFLSAYELPKGNAWTMQLLAVACLSLAAKSDETEVPLPLDLQVDGSKFVFEARTIQRMELLVLSTLRWRMQAITPFSFIDHFLCIISDNADQSFFIRILSFRSIQLILSTIKRVDFLEFKPSVIAAAIAISIVQETQQLHIEKSISLLIQHNEKERAVKCMNLIKEFALISESMKDGRSTGLGLNSVPRSPSGVLDIGGCMSYTNTSDEHNNTVGSCANSCHYSSGVKRRRLNRPCCEV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8708758 8710540 + Conep17aG0121900.1 Cone17ag1189 456666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1189 365 Gene3D - 80 197 - -
Cone17ag1189 365 SUPERFAMILY Cyclin-like 63 196 IPR036915 -
Cone17ag1189 365 SMART cyclin_7 102 190 IPR013763 -
Cone17ag1189 365 Pfam Cyclin, C-terminal domain 199 295 IPR004367 -
Cone17ag1189 365 FunFam D2/4-type cyclin 80 193 - -
Cone17ag1189 365 FunFam D6-type cyclin 194 288 - -
Cone17ag1189 365 Pfam Cyclin, N-terminal domain 69 196 IPR006671 -
Cone17ag1189 365 CDD CYCLIN_AtCycD-like_rpt1 97 194 - -
Cone17ag1189 365 Gene3D - 70 286 - -
Cone17ag1189 365 SMART Cyclin_C_2 199 335 IPR004367 -
Cone17ag1189 365 PANTHER CYCLINS 53 291 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0325 Cone-Chr10:1532544 Cone17ag1189 Cone-Chr17:8708758 1.09E-22 dispersed
Cone17ag1189 Cone-Chr17:8708758 Cone19ag1009 Cone-Chr19:7532746 3.90E-53 dispersed
Cone17ag1189 Cone-Chr17:8708758 Cone20ag0545 Cone-Chr20:3036345 5.84E-218 wgd
Cone17ag1189 Cone-Chr17:8708758 Cone4ag1308 Cone-Chr4:10767744 4.44E-125 wgd
Cone17ag1189 Cone-Chr17:8708758 Cone6ag1538 Cone-Chr6:12087182 1.46E-81 wgd
Cone17ag1189 Cone-Chr17:8708758 Cone7ag0848 Cone-Chr7:6444069 1.45E-120 wgd
Cone17ag1189 Cone-Chr17:8708758 Cone9ag1454 Cone-Chr9:10785867 1.01E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1189 K18810 - cit:102630732 365.54