Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1192 ATGGAATTTGACGAGGAACATGAAGAAGAACAAGAAGAGGAAATGGAGGAAGAGATGCCGACGCAGCAGCATCAACTCGGTACTAACTCGGGTTCGGCCCTGCTGAGAATGGGGCCCAATAGCGGCGAAGGTGGTTTGACGGTTAGAAAAAGTGGGACCGGAACAACTACTGCTCCTCCTACTACTATCAGGTACAGAGAATGCCTGAAGAACCACGCCGTTAGCATAGGCGGACACGCCGTCGACGGTTGCGGAGAGTTCATTGCCGCCGGGGAAGAAGGCACGCTCGACGCGCTTAAATGCGCCGCGTGTAACTGCCACCGGAATTTCCACCGCAAAGAAATCGACTCGCCAGACCAGACCGGTGCTACTAATCACCACTCGCTCCAACCGTATTACCATCACCACCAGAGCTTCGCGCCGCCTTACTACCGTGGACCACCGCTTCAGCCACCTCCGTCGGGTTACCTTCACATGAGCTCTCCACCAGGTCATCAGAGGCCGTTGGCGTTGCCTTCGGCATCGGGAGGTAGAGACGAGGAAGGGATGTCGAATCCGAGCAGTAGCGGCGGGGGCGGAGGAGGATCGTCGAAGAAGAGGTTTAGGACGAAGTTCAGTCAGGAACAAAAGGAGAAAATGTTAGCATTTGCAGAGAGGGTTGGGTGGAGGATTCAAAAGCACGACGAGGCTGCGGTGGAGCAGTTTTGCGCGGAGGCTGGTGTGAACCGCCATGTTTTGAAGGTCTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 786 54.96 MEFDEEHEEEQEEEMEEEMPTQQHQLGTNSGSALLRMGPNSGEGGLTVRKSGTGTTTAPPTTIRYRECLKNHAVSIGGHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKEIDSPDQTGATNHHSLQPYYHHHQSFAPPYYRGPPLQPPPSGYLHMSSPPGHQRPLALPSASGGRDEEGMSNPSSSGGGGGGSSKKRFRTKFSQEQKEKMLAFAERVGWRIQKHDEAAVEQFCAEAGVNRHVLKVWMHNNKHTLGKKP 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8734833 8736016 + Conep17aG0122200.1 Cone17ag1192 456669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1192 261 MobiDBLite consensus disorder prediction 144 158 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 21 36 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 180 194 - -
Cone17ag1192 261 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Cone17ag1192 261 NCBIfam homeobox domain, ZF-HD class 198 254 IPR006455 -
Cone17ag1192 261 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 1 17 - -
Cone17ag1192 261 Gene3D - 182 258 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 1 59 - -
Cone17ag1192 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Cone17ag1192 261 SUPERFAMILY Homeodomain-like 183 259 IPR009057 -
Cone17ag1192 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone17ag1192 261 FunFam Zinc-finger homeodomain protein 2 184 259 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 137 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1192 Cone-Chr17:8734833 Cone20ag0136 Cone-Chr20:611376 3.22E-50 dispersed
Cone17ag1192 Cone-Chr17:8734833 Cone20ag0539 Cone-Chr20:2995418 1.69E-122 wgd
Cone17ag1192 Cone-Chr17:8734833 Cone6ag1541 Cone-Chr6:12098444 6.10E-69 wgd
Cone17ag1192 Cone-Chr17:8734833 Cone9ag1456 Cone-Chr9:10797334 1.74E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45098 PF05236 TAF4 2.00E-82 CL0012 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1192 - - - 0.0