Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1192 ATGGAATTTGACGAGGAACATGAAGAAGAACAAGAAGAGGAAATGGAGGAAGAGATGCCGACGCAGCAGCATCAACTCGGTACTAACTCGGGTTCGGCCCTGCTGAGAATGGGGCCCAATAGCGGCGAAGGTGGTTTGACGGTTAGAAAAAGTGGGACCGGAACAACTACTGCTCCTCCTACTACTATCAGGTACAGAGAATGCCTGAAGAACCACGCCGTTAGCATAGGCGGACACGCCGTCGACGGTTGCGGAGAGTTCATTGCCGCCGGGGAAGAAGGCACGCTCGACGCGCTTAAATGCGCCGCGTGTAACTGCCACCGGAATTTCCACCGCAAAGAAATCGACTCGCCAGACCAGACCGGTGCTACTAATCACCACTCGCTCCAACCGTATTACCATCACCACCAGAGCTTCGCGCCGCCTTACTACCGTGGACCACCGCTTCAGCCACCTCCGTCGGGTTACCTTCACATGAGCTCTCCACCAGGTCATCAGAGGCCGTTGGCGTTGCCTTCGGCATCGGGAGGTAGAGACGAGGAAGGGATGTCGAATCCGAGCAGTAGCGGCGGGGGCGGAGGAGGATCGTCGAAGAAGAGGTTTAGGACGAAGTTCAGTCAGGAACAAAAGGAGAAAATGTTAGCATTTGCAGAGAGGGTTGGGTGGAGGATTCAAAAGCACGACGAGGCTGCGGTGGAGCAGTTTTGCGCGGAGGCTGGTGTGAACCGCCATGTTTTGAAGGTCTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 786 54.96 MEFDEEHEEEQEEEMEEEMPTQQHQLGTNSGSALLRMGPNSGEGGLTVRKSGTGTTTAPPTTIRYRECLKNHAVSIGGHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKEIDSPDQTGATNHHSLQPYYHHHQSFAPPYYRGPPLQPPPSGYLHMSSPPGHQRPLALPSASGGRDEEGMSNPSSSGGGGGGSSKKRFRTKFSQEQKEKMLAFAERVGWRIQKHDEAAVEQFCAEAGVNRHVLKVWMHNNKHTLGKKP 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8734833 8736016 + Conep17aG0122200.1 Cone17ag1192 456669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1192 261 MobiDBLite consensus disorder prediction 144 158 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 21 36 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 180 194 - -
Cone17ag1192 261 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 115 IPR006456 -
Cone17ag1192 261 NCBIfam homeobox domain, ZF-HD class 198 254 IPR006455 -
Cone17ag1192 261 Pfam ZF-HD protein dimerisation region 63 115 IPR006456 -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 1 17 - -
Cone17ag1192 261 Gene3D - 182 258 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 1 59 - -
Cone17ag1192 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Cone17ag1192 261 SUPERFAMILY Homeodomain-like 183 259 IPR009057 -
Cone17ag1192 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone17ag1192 261 FunFam Zinc-finger homeodomain protein 2 184 259 - -
Cone17ag1192 261 MobiDBLite consensus disorder prediction 137 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1192 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1192 Cone-Chr17:8734833 Cone20ag0136 Cone-Chr20:611376 3.22E-50 dispersed
Cone17ag1192 Cone-Chr17:8734833 Cone20ag0539 Cone-Chr20:2995418 1.69E-122 wgd
Cone17ag1192 Cone-Chr17:8734833 Cone6ag1541 Cone-Chr6:12098444 6.10E-69 wgd
Cone17ag1192 Cone-Chr17:8734833 Cone9ag1456 Cone-Chr9:10797334 1.74E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45098 PF05236 TAF4 2.00E-82 CL0012 Cone TF