Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag1201 | ATGGCCTTAGAAACTGTTATGTACCCACAAGATATGAGTTCCATAAACAGCAATTACGCCTGCAAGAATTTCTACCCACTAGAGCTAGATCATGAACACAATTGGGCTTATCATGATAATGATCATCACAACATGGTGTTACAAGAAGATCACGACAATATAACTATTGTCGGAGACATTAATTCTTCACCGGATCACCCGGCCTCCACTGTTGATCTTCCGATGAAACGACAATCAACAACGACCGCCTGTCGTACTTCTACTACCGGTCGAAGAAAACGACGTCGCACTAAGAGCGCGAAAAACCGGGAAGAGATGGAGAACCAGAGAATGACTCACATTGCTGTCGAGCGCAACCGCCGGAAACAGATGAATGACTACCTCGCCGTCCTCCGATCACTAATGCCACCGTCCTACGTCCAAAGGGGTGATCAGGCATCTATTATTGGTGGAGCCATTAATTTTGTCAAAGAGCTAGAACAGCATCTGCAATTCATGAAGGTGCATAATAAGACAACAACGCAACAACCGCCGGATAGTTACTCTTCTCCTAATATTTCTCCTTTGGCCGAGTTATTCACTTTCCCTCAATACTCGACATGTGCAACTCACGATCATCATCATCAGAATCGAGAATCAACGTCGGCGCAGATGAATCAGTACTGGGCCGTTGCTGACATAGAAGTGAACATGGTAGAAAGCCATGCCAATCTGAAGATACTGTCGAAAAAACAGCCGAAGCAGTTATTAAAAATGGTCTTAGGATTTCAAACTCTTCGACTTACTGTTCTTCACCTCAACGTTACCACTGTCGATCATATGGTCCTCTACTCACTAAGCCTTAAGGTAGAGGAAGGTTGCCAGCTAAATACAGTGGATGAAATAGCAGCTGCTGTTAATCAAATGCTACATATTATTGAAGAAGAAGCTGCTTTAATTAGCTAA | 945 | 43.6 | MALETVMYPQDMSSINSNYACKNFYPLELDHEHNWAYHDNDHHNMVLQEDHDNITIVGDINSSPDHPASTVDLPMKRQSTTTACRTSTTGRRKRRRTKSAKNREEMENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQHLQFMKVHNKTTTQQPPDSYSSPNISPLAELFTFPQYSTCATHDHHHQNRESTSAQMNQYWAVADIEVNMVESHANLKILSKKQPKQLLKMVLGFQTLRLTVLHLNVTTVDHMVLYSLSLKVEEGCQLNTVDEIAAAVNQMLHIIEEEAALIS | 314 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 8768360 | 8769487 | - | Conep17aG0123100.1 | Cone17ag1201 | 456678 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag1201 | 314 | MobiDBLite | consensus disorder prediction | 68 | 108 | - | - | |
| Cone17ag1201 | 314 | Gene3D | - | 98 | 176 | IPR036638 | GO:0046983(InterPro) | |
| Cone17ag1201 | 314 | Pfam | Helix-loop-helix DNA-binding domain | 109 | 160 | IPR011598 | GO:0046983(InterPro) | |
| Cone17ag1201 | 314 | PANTHER | MAX DIMERIZATION, MAD | 43 | 304 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Cone17ag1201 | 314 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 107 | 178 | IPR036638 | GO:0046983(InterPro) | |
| Cone17ag1201 | 314 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 108 | 159 | IPR011598 | GO:0046983(InterPro) | |
| Cone17ag1201 | 314 | SMART | finulus | 114 | 165 | IPR011598 | GO:0046983(InterPro) | |
| Cone17ag1201 | 314 | MobiDBLite | consensus disorder prediction | 68 | 87 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag1201 | Cone-Chr17:8768360 | Cone4ag1316 | Cone-Chr4:10820470 | 2.17E-81 | dispersed | |
| Cone17ag1201 | Cone-Chr17:8768360 | Cone20ag0528 | Cone-Chr20:2865702 | 2.89E-187 | wgd | |
| Cone17ag1201 | Cone-Chr17:8768360 | Cone7ag1260 | Cone-Chr7:9361322 | 5.06E-80 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45099 | PF05004 | IFRD | 4.50E-86 | CL0020 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag1201 | - | - | - | 0.0 |