Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1216 ATGTGGCCGAGGGTTTGGGGAGCGGGGATCGTTGTGTTGGTCGTGATTTGGGGGAGATTAACATACGCAGCGGATCCGATTGGGGTTTCATTTTCGAGCAATTTGTGCCCTTTGGAGTCCATTTCGGATTCGATCTTTGGGTTTCGGGATTGCTATTGCCCCCTTTATTCTGATGATTCCCAACTTTATAATTTCGTTGGTGTTGCCGAGGGTGATGACATCTCATTGCAAATGGCATTAAATCTGGTGCACAGGAATAGTTATGAATATGTTGCAGTGCTCTTCTACGCATCTTGGTGCCCGTTCTCTAGGATATTTAGACCGAGCTTCTCTGTTCTCTCTTCACTCTATCCTTCCATCCCACATTTTGCAATCGAAAAAGCAGCCATCAGGCCAAGCACGCTCTCAAAATATGGGGTTCATGGGTTCCCTACTCTTTTTCTTTTGAATTCAACTATGCGGGTACGGTATTATGGCTCAAGGACACTTGGTTCCCTTGTCACTTTCTACAGTGATGTTACGGGCATCAAAACTGCTTCATTGGATCAAGTATCTTCTGACAAAATGGGACGCTCATTAAACCAAGAGAAGCATAACAATACTGAGCCGGAAAACTGCCCATTCTCATGGGCAAGATCTCCAGAGAATTTGCTTAGAGAGGAAACATATTTAGCTCTAGCAACTGCATTTGTGCTTCTCAGAATGATATATTTCTTTTACCCAACCCTATCTGCACTTATCCAATATGCTTGGAGAAGGCACATTAGAAACATGAGATTAGGTAGCTTTTGGGAACACCCTTTCGCCTATATGAAGCGAGCCATACTGCTGTTTGGCTCTTTGAAGGAGCCTTGCAAGAGAAGCAATTTGCAGGGGGCTATGAATGCCAAGGCATGGGCGTCCAAGTCTCTTGCCACAGTTTCAATTGGGGATGCAGGTTCCAGTCGGGGAAATGAGAATCGTTGA 966 45.03 MWPRVWGAGIVVLVVIWGRLTYAADPIGVSFSSNLCPLESISDSIFGFRDCYCPLYSDDSQLYNFVGVAEGDDISLQMALNLVHRNSYEYVAVLFYASWCPFSRIFRPSFSVLSSLYPSIPHFAIEKAAIRPSTLSKYGVHGFPTLFLLNSTMRVRYYGSRTLGSLVTFYSDVTGIKTASLDQVSSDKMGRSLNQEKHNNTEPENCPFSWARSPENLLREETYLALATAFVLLRMIYFFYPTLSALIQYAWRRHIRNMRLGSFWEHPFAYMKRAILLFGSLKEPCKRSNLQGAMNAKAWASKSLATVSIGDAGSSRGNENR 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8836232 8838132 + Conep17aG0124700.1 Cone17ag1216 456693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1216 321 PANTHER 5'-ADENYLYLSULFATE REDUCTASE-LIKE 4-RELATED 4 318 IPR044606 -
Cone17ag1216 321 CDD PDI_a_ERp44_like 71 170 - -
Cone17ag1216 321 Gene3D Glutaredoxin 78 189 - -
Cone17ag1216 321 ProSiteProfiles Thioredoxin domain profile. 54 175 IPR013766 -
Cone17ag1216 321 Pfam Thioredoxin 87 169 IPR013766 -
Cone17ag1216 321 SUPERFAMILY Thioredoxin-like 87 174 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1216 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0536 Cone-Chr10:2491809 Cone17ag1216 Cone-Chr17:8836232 9.13E-27 dispersed
Cone17ag1216 Cone-Chr17:8836232 Cone20ag0509 Cone-Chr20:2751352 2.97E-216 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g414 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01114 Cam08g1570 Cec08g1140 Cco08g1267 Clacu08g1271 . Cre08g1052 . Cone7ag1595 Cone17ag1216 Cone20ag0509 . . . . . . . Bda13g01400 . Bpe14g00455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006582 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 0 37