Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1218 ATGGATAAATTATGCTGTTTTAGTGCTTCTTTCGATGAGCCATCAAACAGCTCGTCGGGCCGGGGAAGGAATCCGGAGGGATCTATCAAATACGGGTTCAGCCTCGTAAAAGGGAGAGCTAATCATCCCATGGAGGATTATCATGTAGCTAAGTTTCTTCATACTCAAGGACATGAATTAGGGCTCTTTGCGCTATATGATGGTCACTCGGGCGATAAAGTTCCAGCCTACTTACAAAAACATCTGTTTTCCAACATCCTGGAAGAGAATGAGTTCTGGGTGGACCCCAGAAGTTCTATCTCGAAGGCATACGAGAAGACGGACAAAGCAATTCTATCCGGTAGCAATGACCTCGGGCAAGGGGGGTCCACTGCTGTAACTGCCATTCTGATCAACGGTCAGAGATTATGGGTAGCCAATCTGGGAGACTCCCGGGCAGTTCTTTCCAGAGGAGGCCAAGCTGTGCAGATGACTACTGACCACGAGCCCCATACTGAACGACAAAGCATCGAGAAAAAAGGCGGCTTTGTTTCAAACATGCCAGGTGATGTGCCTAGAGTTAATGGGCAGCTTGCGGTCTCTCGAGCTTTTGGGGACGAGGGACTTAAATCTCATTTAAGGTCAGACCCAGACATACAAGATGCCAACATCGATTTCAATACTGATTTGCTAATTCTTGCAAGTGATGGCCTTTGGAAGGTGATGGCAAATCAAGAGGCAGTTGATATTGCAAGAAGGGTCAAGGATTCATTGAAGGCTGCTAAGAGTTTAACAGATGAAGCTTTGAAGAAAGAGAGCAGGGATGACATTTCTTGCATTGTTGTCAGATTTGGATGA 837 46.36 MDKLCCFSASFDEPSNSSSGRGRNPEGSIKYGFSLVKGRANHPMEDYHVAKFLHTQGHELGLFALYDGHSGDKVPAYLQKHLFSNILEENEFWVDPRSSISKAYEKTDKAILSGSNDLGQGGSTAVTAILINGQRLWVANLGDSRAVLSRGGQAVQMTTDHEPHTERQSIEKKGGFVSNMPGDVPRVNGQLAVSRAFGDEGLKSHLRSDPDIQDANIDFNTDLLILASDGLWKVMANQEAVDIARRVKDSLKAAKSLTDEALKKESRDDISCIVVRFG 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8842993 8844550 - Conep17aG0124900.1 Cone17ag1218 456695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1218 278 CDD PP2Cc 29 277 IPR001932 -
Cone17ag1218 278 Gene3D - 26 278 IPR036457 -
Cone17ag1218 278 ProSiteProfiles PPM-type phosphatase domain profile. 30 277 IPR001932 -
Cone17ag1218 278 SMART PP2C_4 26 275 IPR001932 -
Cone17ag1218 278 SUPERFAMILY PP2C-like 27 278 IPR036457 -
Cone17ag1218 278 FunFam Probable protein phosphatase 2C 39 22 278 - -
Cone17ag1218 278 SMART PP2C_SIG_2 41 277 IPR001932 -
Cone17ag1218 278 PANTHER PROTEIN PHOSPHATASE 28 275 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone17ag1218 278 Pfam Protein phosphatase 2C 39 270 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1218 Cone-Chr17:8842993 Cone3ag1093 Cone-Chr3:29567925 2.02E-143 dispersed
Cone17ag1218 Cone-Chr17:8842993 Cone20ag0507 Cone-Chr20:2741321 2.18E-152 wgd
Cone17ag1218 Cone-Chr17:8842993 Cone4ag1335 Cone-Chr4:10921634 9.68E-144 wgd
Cone17ag1218 Cone-Chr17:8842993 Cone7ag1594 Cone-Chr7:10900747 2.95E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1218 K17506 - rcu:8281649 454.521