Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1223 ATGTCGCACTTTGGAAGGTCTGGTCCACCTGATATCAGAGACACCTACTCGCTCCTTGTTCTCAACATTACTTTCCGAACCACTGCAGATGATCTTTACCCTCTCTTCGACAAGTACGGCAAGGTCGTCGATGTTTTCATTCCTAGAGACCGCAGGAGTGGAGATTCTAGAGGCTTTGCATTTGTACGGTACAAGTATGCTGACGAAGCGCAGAAGGCTGTTGAAAAGCTTGACGGAAGAATGGTCGATGGCAGAGAGATTATGGTGCAGTTTGCTAAGTATGGTCCTAATGCTGAAAAGATCCAAAAGGGGCGGATAATAGAGTCATCAAAGGAAAAGGATAGGATGCGAAGCCGTAGTCCTCCTCCAAGGCACCGAGGGGACCATAAGGACAGAGATTACCAAAGGAGAAGTCGCAGTAGAAGCAGAAGTAGGGAGAGATACAGTCGTGATAAATCACGAAGAAGTGAAAGAGAACAGCGCCATAGAAGTAGAAGTAAAAGTTGCAGTGCCAGTCCTGATCATGGTAGAGACCGTAGAAGGGGCAGGTATGATGATGAACGTCGTAGCCGTAGCCCATCCTATGGAAGCGCCTCCCCTGCTCGGAACAGTCCTAGTTCAAAGAGGAGCCCATCTCCTCATAGAACACCAGCTAGGGATGAAAGTCCCGATGAACGAATTGATAAAAAGCACTCTCCTACTCCAAAAAATAGTTCTCCACCTGGTAGGCGTGCGTATTCCAGGAGCCCATCTCCACATAAATCTGATTCTGAGGAGTGA 780 47.95 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRSGDSRGFAFVRYKYADEAQKAVEKLDGRMVDGREIMVQFAKYGPNAEKIQKGRIIESSKEKDRMRSRSPPPRHRGDHKDRDYQRRSRSRSRSRERYSRDKSRRSEREQRHRSRSKSCSASPDHGRDRRRGRYDDERRSRSPSYGSASPARNSPSSKRSPSPHRTPARDESPDERIDKKHSPTPKNSSPPGRRAYSRSPSPHKSDSEE 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8864257 8867718 + Conep17aG0125400.1 Cone17ag1223 456700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1223 259 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 9 214 IPR051106 -
Cone17ag1223 259 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Cone17ag1223 259 MobiDBLite consensus disorder prediction 100 259 - -
Cone17ag1223 259 SMART rrm2_1 17 90 IPR003954 GO:0003676(InterPro)
Cone17ag1223 259 MobiDBLite consensus disorder prediction 193 212 - -
Cone17ag1223 259 SMART rrm1_1 17 90 IPR000504 GO:0003723(InterPro)
Cone17ag1223 259 Gene3D - 4 103 IPR012677 -
Cone17ag1223 259 Pfam RNA recognition motif 18 87 IPR000504 GO:0003723(InterPro)
Cone17ag1223 259 CDD RRM_SRSF2_SRSF8 18 90 - -
Cone17ag1223 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723(InterPro)
Cone17ag1223 259 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676(InterPro)
Cone17ag1223 259 MobiDBLite consensus disorder prediction 104 192 - -
Cone17ag1223 259 MobiDBLite consensus disorder prediction 213 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1223 K12891 - - vvi:100243776 336.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0932 Cone-Chr10:4879942 Cone17ag1223 Cone-Chr17:8864257 1.58E-63 dispersed
Cone17ag1223 Cone-Chr17:8864257 Cone3ag1099 Cone-Chr3:29599167 3.26E-64 dispersed
Cone12ag0967 Cone-Chr12:8360153 Cone17ag1223 Cone-Chr17:8864257 9.19E-28 wgd
Cone17ag1223 Cone-Chr17:8864257 Cone20ag0501 Cone-Chr20:2717036 6.02E-89 wgd
Cone17ag1223 Cone-Chr17:8864257 Cone8ag1004 Cone-Chr8:9372756 6.27E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g401 . Blo12g00705 . Bda03g00492 Bpe02g00103 Bpe04g00448 . Bma01g02615 Cmo05g00520 Cmo12g00119 . . . Car12g00143 Sed04g0139 . Cpe07g00130 Bhi04g00752 Tan02g2384 Cmetu03g0980 . Hepe10g0506 . Lcy13g1568 Cla08g01104 Cam08g1557 Cec08g1130 Cco08g1257 Clacu08g1259 . Cre08g1041 . . Cone17ag1223 Cone20ag0501 . . . Cme03g01517 . Blo18g00134 Bda11g00763 . . . . . . . . Cma12g00154 Cma05g00497 Car05g00445 . Cpe11g00435 . . . . . . . . . . . . . . . Lsi08g00960 . Chy03g01026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001751 2 2 2 1 2 2 4 2 2 1 2 2 3 2 2 2 2 4 4 2 2 2 2 2 2 2 1 4 5 1 68