Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1224 ATGAACAACTCTCCACTTTTCTTCTGCTCCTTGGTTTTTCTGGTTTTAATATCAAACACAGTTTTATCCTCTGTTTCTGGTTCCGAGGAAGAAGCTAATGCTCTCCTAAAATGGAAAGCCACCATTGTAAATCAAACCCAGTCTAAATTATCTTCCTGGATTTCATTACCCCAAAACAGCAACCAAAGCTTAAGTCCGTGCAATTGGTATGGAGTTAATTGCAACTCTAATGAAAGTATCATCAGAATCAACCTGACTACCTCTGGTTTACAAGGTACGCTTGATGAGTTTTCCTTCTCATCTTTCCCTAATCTCGCATATTTTGAGCTTAGCGTGAATAGCTTCTTCGGAACAGTCCCACCTCAAATCAGCAACCTCTCCAAATTGATATATCTTGATTTCTCCCTCAATCAATTTTCCGGGAAAATCCCACCTGAAATCGGGATGTTAAGAAATCTTCAAGTCCTCCACCTTGTTGAGAATCAATTGACTGATTCAATGCCTCAAGAAATTGGCCAGCTAAGCTCTCTCACGGAGTTAGCTGTTCACGCCAATAATCTTCAGGGTCCAATTCCATCTTCTATAGGAAACTTGAGCAACATGGAACATTTGTTTCTCTATGAAAATCAATTTTCCGCGTTTATTCCAGAAGAAATGGGAAATCTTTTAAACTTGGTTGAGCTTTATATGGATCGGAACAGTTTGAGCGGTCCAATCCCTAAATCGTTCGGAAATCTAAAGAAACTAAATGTGTTGTATTTGTTTGACAACGAACTTTCTGGGCCTATTCCTGAAGAGCTGGGAAATTTGGAAAGTCTCATCTTTTTAAGCTTGCAAACAAATCATCTTTCCGGGTCAATACCAGCTTCATTGGGTAATCTTAGAAAACTTACCCTTCTTCATTTATATAAGAATAAACTCACTGGGCCCATTCCTAAAGAGCTTGGAAACTTGACATTGATGGAAGACTTAGAGCTCAGTCAGAATAATCTCAATGGCTCTATTCCAGTTTCATTTGCTCAACTAATCAATTTGCAAATCCTGTTTCTTCGTGACAACGAACTATCCGGTTTAATTCCGAAAGAATTTGAGCATTTGACTCAGTTGGTTATATTGCAACTGGATGCTAATAGATTCACCGGAAGTGTGCCAGATAGCTTCTGTTCAGGAGGAATACTTCAGAATTTCACTCTTAACGACAACAACCTCACTGGTCCGATTCCAAAAAGCTTAACAAACTGCTCGAGCCTGGTCCGGTTTCGCCTAAATAATAATCAGTTCAGTGGAAATATTTCTGAAGATTTTGGTGTCTATCCTGATCTTGACTTCATTGATCTAAGCAACAACAGATTTTATGGTGAAATCTCTCCTAAATGGGGAAAATGTTCTCAATTAGCATCCCTCCTTCTTGGCCGAAACAACATTTCCGGTCAGTTACCTCCTGAGATTGGAAACTCTACGCAACTCCGTATACTTGATTTATCATTCAATCAAATAGAAGGAGCAATCCCTAAGGAAATTGGAAGGTTAACTTCTTTATTGACTTTGTTGATGAATGGAAACCAACTTTCCGGTCAAATTCCTTCAGAGCTCGGATCATTAACTGATCTTGAACGCCTTGACATTTCGTCGAATAGATTGAGTGCGTCAATTCCAAGCTTTTTAGGCGAATTCTTCAGTTTGAATTACTTGAACTTGAGCAATAACAGGTTCAATCAAGCAATTCCAGGCGAGGTAGGGAGTCTGGTTCATCTTTCTCAGCTCGATTTGAGTAACAACTCGCTGAATGGGACGATACCATCAGAAATCGGAAAAATGCAGAGCTTGGAGATGCTTAATATCTCTCATAATAATCTCTCAGGTTCGATTCCGAAAACTTTTGAAGAAATGTCTGGATTGCTCTTCATCGATATATCTCACAATCAGTTACAAGGTCCTCTTCCAAACACGACTGCGTTTCAGAAAACCCCAATCCAAGCCCTCGAAGGCAACAATGGCTTATGCGGCGGCGTAGAACTTCCAGCCTGTAATTCTTTTTCAACTTCGCCCAAAAAAAAGTCGAAGAACAACCGAAAGCTCGTCTTCCTAATCGTTTTCCCTCTTCTCGGAGCAGTTCTTCTTCTTCTGTTAATTTTCCTCGGAATTTTCATGGCGATTAGAAGAAAGAGAGATCGAGAAATCGAAAAAGGCAACACGGAAGGAAAATTCTTCTCGATTCCGGATTACGCAGACAGATCACTATACGAAGAAATCATCAAAGCGACTGTAGATTTCGATCCGAAATATTCCATCGGAAAAGGAGGATCCGGCACTGTCTACAGAGCCAAACTAAAATCCGGCGAAATCGTAGCAGTAAAGAAACTACATGTCGCTCAACAAGAGACCATTCCAGAAACGAAATCTCCATCTCCTTCACCATTATTGTCACTTCCAAAGGAGTTTCTGACCGAGATAACGGCATTAATCGAGACACGGCATCGGAACATCGTGAAGCTTCGTGGATTCTTCTCGAATGCTAGGAATTCGTTGGTGGTTTATGATTATTTGGAGAGAGGAAGCTTGGGCGAAGTATTGAGCAGAGACGATGACGCGAAGGGACTGGATTGGGTGAAGAGGATGAATGTGTTGAAAGGCGTCGCCTTTGCTCTGTCGTACATGCACCATGATTGTGTGCCGCCCATTGTTCATCGAGATATATCGAGCAACAATATTTTGCTTGATTTAGAGTATGAAGCTCGGGTTTCTGATTTCGGCATTGCTAGACTTCTCAACCGTGATTCCTCTATCTGGACTGCCATGGCGGGAACTTACGGATATCTAGCTCCGGAATTTGCCTATACAATGAAAGTAACGGAAAAATGCGACGTTTATAGTTTTGGAGTGTTAGCATTAGAAGTGATGAGGGGAAAACATCCGGGCCATCTCATCTCTTCTCCATTCTCCGAACTGGTTAAAGATAGCAAAACATTGGATGATTTGTTAGACCAACGACTTCCGGCTCCAACCCGTGACATCGAAAATGAATTGATAAGCATTTTAAGGATCGCAATGGCATGTTTGAGTGAAAATCCTGATTCAAGACCTACCATGCGTAAGGTGTCTCAAGCTTTATCAAGTTGTGTAGATAACTTGCACATTTCCATAACATGA 3150 40.95 MNNSPLFFCSLVFLVLISNTVLSSVSGSEEEANALLKWKATIVNQTQSKLSSWISLPQNSNQSLSPCNWYGVNCNSNESIIRINLTTSGLQGTLDEFSFSSFPNLAYFELSVNSFFGTVPPQISNLSKLIYLDFSLNQFSGKIPPEIGMLRNLQVLHLVENQLTDSMPQEIGQLSSLTELAVHANNLQGPIPSSIGNLSNMEHLFLYENQFSAFIPEEMGNLLNLVELYMDRNSLSGPIPKSFGNLKKLNVLYLFDNELSGPIPEELGNLESLIFLSLQTNHLSGSIPASLGNLRKLTLLHLYKNKLTGPIPKELGNLTLMEDLELSQNNLNGSIPVSFAQLINLQILFLRDNELSGLIPKEFEHLTQLVILQLDANRFTGSVPDSFCSGGILQNFTLNDNNLTGPIPKSLTNCSSLVRFRLNNNQFSGNISEDFGVYPDLDFIDLSNNRFYGEISPKWGKCSQLASLLLGRNNISGQLPPEIGNSTQLRILDLSFNQIEGAIPKEIGRLTSLLTLLMNGNQLSGQIPSELGSLTDLERLDISSNRLSASIPSFLGEFFSLNYLNLSNNRFNQAIPGEVGSLVHLSQLDLSNNSLNGTIPSEIGKMQSLEMLNISHNNLSGSIPKTFEEMSGLLFIDISHNQLQGPLPNTTAFQKTPIQALEGNNGLCGGVELPACNSFSTSPKKKSKNNRKLVFLIVFPLLGAVLLLLLIFLGIFMAIRRKRDREIEKGNTEGKFFSIPDYADRSLYEEIIKATVDFDPKYSIGKGGSGTVYRAKLKSGEIVAVKKLHVAQQETIPETKSPSPSPLLSLPKEFLTEITALIETRHRNIVKLRGFFSNARNSLVVYDYLERGSLGEVLSRDDDAKGLDWVKRMNVLKGVAFALSYMHHDCVPPIVHRDISSNNILLDLEYEARVSDFGIARLLNRDSSIWTAMAGTYGYLAPEFAYTMKVTEKCDVYSFGVLALEVMRGKHPGHLISSPFSELVKDSKTLDDLLDQRLPAPTRDIENELISILRIAMACLSENPDSRPTMRKVSQALSSCVDNLHISIT 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8867978 8872262 + Conep17aG0125500.1 Cone17ag1224 456701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1224 1049 FunFam Leucine-rich repeat receptor protein kinase MSP1 720 848 - -
Cone17ag1224 1049 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524(InterPro)
Cone17ag1224 1049 ProSiteProfiles Protein kinase domain profile. 758 1048 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1224 1049 Gene3D Transferase(Phosphotransferase) domain 1 849 1047 - -
Cone17ag1224 1049 Pfam Leucine rich repeat 176 235 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine rich repeat 584 643 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine rich repeat 337 379 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Gene3D Phosphorylase Kinase; domain 1 721 848 - -
Cone17ag1224 1049 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Cone17ag1224 1049 SUPERFAMILY Protein kinase-like (PK-like) 739 1037 IPR011009 -
Cone17ag1224 1049 Pfam Protein kinase domain 762 1035 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1224 1049 SUPERFAMILY L domain-like 53 384 - -
Cone17ag1224 1049 FunFam Nuclear pore complex protein NUP107 28 191 - -
Cone17ag1224 1049 FunFam MDIS1-interacting receptor like kinase 2 849 1043 - -
Cone17ag1224 1049 Gene3D Ribonuclease Inhibitor 287 389 IPR032675 -
Cone17ag1224 1049 Gene3D Ribonuclease Inhibitor 187 286 IPR032675 -
Cone17ag1224 1049 PANTHER LEUCINE RICH REPEAT KINASE 2 316 1039 IPR051420 -
Cone17ag1224 1049 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 388 680 - -
Cone17ag1224 1049 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 192 287 - -
Cone17ag1224 1049 SUPERFAMILY RNI-like 311 648 - -
Cone17ag1224 1049 SMART LRR_sd22_2 486 501 - -
Cone17ag1224 1049 SMART LRR_sd22_2 222 248 - -
Cone17ag1224 1049 SMART LRR_sd22_2 174 200 - -
Cone17ag1224 1049 SMART LRR_sd22_2 582 605 - -
Cone17ag1224 1049 SMART LRR_sd22_2 342 363 - -
Cone17ag1224 1049 SMART LRR_sd22_2 606 632 - -
Cone17ag1224 1049 SMART LRR_sd22_2 534 556 - -
Cone17ag1224 1049 SMART LRR_sd22_2 294 326 - -
Cone17ag1224 1049 SMART LRR_typ_2 534 558 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 246 270 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 342 365 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 582 605 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 294 318 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 150 174 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 366 389 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 606 629 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 198 222 IPR003591 -
Cone17ag1224 1049 SMART LRR_typ_2 487 510 IPR003591 -
Cone17ag1224 1049 Pfam Leucine Rich Repeat 488 510 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 537 556 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 296 318 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 560 582 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 248 270 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 512 534 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine Rich Repeat 128 149 IPR001611 GO:0005515(InterPro)
Cone17ag1224 1049 Pfam Leucine rich repeat N-terminal domain 29 75 IPR013210 -
Cone17ag1224 1049 PRINTS Leucine-rich repeat signature 585 598 - -
Cone17ag1224 1049 PRINTS Leucine-rich repeat signature 606 619 - -
Cone17ag1224 1049 ProSitePatterns Tyrosine protein kinases specific active-site signature. 894 906 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1224 1049 FunFam MDIS1-interacting receptor like kinase 2 isoform A 288 387 - -
Cone17ag1224 1049 Gene3D Ribonuclease Inhibitor 390 680 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1224 Cone-Chr17:8867978 Cone17ag1259 Cone-Chr17:9063232 8.04E-133 dispersed
Cone17ag1224 Cone-Chr17:8867978 Cone17ag1225 Cone-Chr17:8872833 4.62E-150 tandem
Cone12ag0966 Cone-Chr12:8355603 Cone17ag1224 Cone-Chr17:8867978 7.02E-103 wgd
Cone17ag1224 Cone-Chr17:8867978 Cone20ag0577 Cone-Chr20:3317756 7.70E-06 wgd
Cone17ag1224 Cone-Chr17:8867978 Cone20ag0500 Cone-Chr20:2712519 9.42E-253 wgd
Cone17ag1224 Cone-Chr17:8867978 Cone8ag1002 Cone-Chr8:9369579 1.63E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82280 PF00010 HLH 5.00E-06 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1224 - - - 0.0