Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1225 ATGATGAAGCCTTTTCTTGCATACGTCTTTTCATTGCTTCTGCTAGTTTCAACCTCGAGTGTGGTTTCATTTGTTTCGGCTTCTCCGAAAGAAGAGGCCAATGCTCTTCTCAAATGGAAAGCCAGCTTTCAAAATCAAACCCACATTAGTTTACATTCTTGGACCTCGTCACTCAACCAAAGCTCAAGTCCTTGCAGTTGGTTTGGTATCACTTGCAACTCTGGTCACAGCATTATCAGAATCGAACTGAATAATTCTGGCTTGCAAGGTAATCTCCATGATTTTTCGTTTTTGGCTTTTCGTAATCTTACATATCTCGATTTTAGCACGAATTACCTCTTTGGAACCATCCCGCCTCAAATCAGCAACCTCTCCAAACTTGCCTATCTTGATTTGTCCACAAATCAGTTTTCTGGGAAACTCCCACCAGAAATTGGATTTCTAGGAAATCTTGGAGTCCTCAATCTTGTGGAAAATAATTTTAACGATTCAATACCTCATGAAATAGGTTTGTTGAATTCTCTTAAGGTGTTTGTAATATTCACTAACAATCTTCGGGGTTCGGTTCCATCTTCTCTAGGCAATATGAGCAGTCTAGAAGTATTGTACCTCTGTAAGAATCAATTTTCTTCGTTCATTCCGATAGAGATTGGAAATCTTTCCAACTTGGTTGAACTTGACATGAGTAACAATAATTTCACTGGTCCAATCCCTAAATCGCTAGGGAATTTACGGAAGCTAAATATGTTGCATTTGACCAATAACGAACTTTCTGGGTCCATCCCGGAAGAGATAGGAAATATGGAACTTATGGTCACTTTAACAGTAGATCAGAATCATCTCAAGGGCCCTGTTCCAGCTTCATTAGCTCAGTTAAACAATTTAGAAATCTTGTATCTCCGTGACAATGAACTATCTGGTTCTTTCTTGAGAGAGATTAAGAATCTCACTAAGCTGCGTGTACTTGAGATGGACACAAATAGATTCACGGGGAACCTGGCAGAAAGCTTCTGTTCTGGAGGTGTACTTCAAAATTTAACCCTTAGTAACAACTATCTCAGCGGTCCGATTCCAAAAAGATTTAGAAACTGTTCAAGCTTAATGCGAGTCCGACTAAATGATAACCAACTCAGTGGAAATGTTTCTGAAGATTTTGGTGTCTATCCCGCTCTTGACTTCATTGATCTAAGCAATAACAACTTTTACGGAAAAATATCTCAGAGATGGGGACAATGCTCCCGGTTAACAACCTTAATTCTCGCCCAAAACAACATTTCCGGTCAGTTACCTCCTGAGATTGCAAACTCCCCTCATCTCCAAGTACTTGATTTATCTTTCAATTTTCTACAAGGACCAATCCCAAAGGAACTTGGAAGTTTAGCTTTGGTGAAGTTGATGCTGAATGGCAATCAGTTTTCTGGTGGTATCCCTTCAGAGCTTGGATCATTGACTAATCTTGAATATCTTGACATTTCATCAAACAGATTGAGTGCGTCAATTCCGAGCTTTCTTGGCGAATTATCGAAGATATATTACTTGAACTTGAGCAACAACAAGTTGAGTCAAGCAATTCCAGGCGAGGTAGGGAGTCTGGTTCATCTTTCTCGGCTCGATTTGAGTTACAACTCGCTGAATGGGACGATACCGTCAGAAATCGGAAAAATGCAGAGCTTGGAGATGCTTAATATCTCTCACAACAATCTTTCAGGTTCGATTCCGAAAACTTTTGAAGAAATGTCTGGATTGCTCGTCATCGATATATCTCACAATCAGTTGAAAGGTCCTCTTCCAAACACGACTGCGTTTCAGAAAGCTCCAATCCAAGCCCTAGAAGGCAACACTGGCTTATGCGGCAGTGTAGAACTTCAAGCTTGCAATTCAACTTCTTTGAAAGATAAATCAAGTACGAACCCTAGACTTGTGTTTGTAATTGTTTTCCCTCTCCTTGGAGCAGTTCTTCTACTCGCAGCTGCCTTCTCTGCAATTCTGATGGCAATGAATAAAAGAAAGAAAGAACCAGAAATGGAAGAAGGAGGCAACAAAAATGCAGAGCTCTTTTCGGTGTTGAAATTCGATGGAAGAACAGTGTACGAAGAAATCATAAAAGCAACTGAAGATTTCGATACAAAGTTTCAGATTGGAAGAGGAGGGACTGGTACCGTCTACAAAGCAAATCTAACATCTGGTCACGTAGTAGCGGTGAAGAAACTACATGTCAGACAAGAAGACACAATCCCAAAGGAGCTTGAAAACGAGGTTACAGCATTAACAGAGATACGACATCGCAACATCGTGAAGTTCTACGGGTTTTGTTTGCATTCCCAGAACTTGTTCTTAGTTTATGAGTATCTTGAAAGAGGGAGCTTGGGATGCCTACTGAGCAGAGATAATGATGCCCAGCAACTAGATTGGTCAAAGAGGATGCAGATTTTGAAAGGGGTGGCTTCTGCTCTGTCGTACATGCATCATCACTGCGTTCCTCCAATTGTTCATCGAGACATTAAAAGCACCAACATTTTGCTTCATGCTGACTATGAAGCCTGTGTCTCTGACTTCGGATCTGCTAAACTTCTGAGGCCGGATTCATCTAACTGGACGGCAATGGTGGGAACCTTCGGATATGTAGCACCAGAACTAGCGTATACGATGAAGGTGACGGAAAAATGTGATGTTTATAGCTTCGGAGTAGTAGCTCTAGAGGTAATAAGAGGAAAGCATCCTGGGGAGTCAATCTCCTCACTAGTTTCTCCGTCGGCCGTAGAGAAGAACAACACGACACTAAATGATTTGTTAGATCAACGGCTTCCACCTCCAGTTCCTCATGTTGAGGAAGAACTGATCAGCGTTTTGAAGATTGCAAGGACATGCTTAAGTGAGAATCCGGATTCCAGACCCACCATGGATATGGTTTCTCAATCTCTATCGAAACTTATGATATAG 2940 41.22 MMKPFLAYVFSLLLLVSTSSVVSFVSASPKEEANALLKWKASFQNQTHISLHSWTSSLNQSSSPCSWFGITCNSGHSIIRIELNNSGLQGNLHDFSFLAFRNLTYLDFSTNYLFGTIPPQISNLSKLAYLDLSTNQFSGKLPPEIGFLGNLGVLNLVENNFNDSIPHEIGLLNSLKVFVIFTNNLRGSVPSSLGNMSSLEVLYLCKNQFSSFIPIEIGNLSNLVELDMSNNNFTGPIPKSLGNLRKLNMLHLTNNELSGSIPEEIGNMELMVTLTVDQNHLKGPVPASLAQLNNLEILYLRDNELSGSFLREIKNLTKLRVLEMDTNRFTGNLAESFCSGGVLQNLTLSNNYLSGPIPKRFRNCSSLMRVRLNDNQLSGNVSEDFGVYPALDFIDLSNNNFYGKISQRWGQCSRLTTLILAQNNISGQLPPEIANSPHLQVLDLSFNFLQGPIPKELGSLALVKLMLNGNQFSGGIPSELGSLTNLEYLDISSNRLSASIPSFLGELSKIYYLNLSNNKLSQAIPGEVGSLVHLSRLDLSYNSLNGTIPSEIGKMQSLEMLNISHNNLSGSIPKTFEEMSGLLVIDISHNQLKGPLPNTTAFQKAPIQALEGNTGLCGSVELQACNSTSLKDKSSTNPRLVFVIVFPLLGAVLLLAAAFSAILMAMNKRKKEPEMEEGGNKNAELFSVLKFDGRTVYEEIIKATEDFDTKFQIGRGGTGTVYKANLTSGHVVAVKKLHVRQEDTIPKELENEVTALTEIRHRNIVKFYGFCLHSQNLFLVYEYLERGSLGCLLSRDNDAQQLDWSKRMQILKGVASALSYMHHHCVPPIVHRDIKSTNILLHADYEACVSDFGSAKLLRPDSSNWTAMVGTFGYVAPELAYTMKVTEKCDVYSFGVVALEVIRGKHPGESISSLVSPSAVEKNNTTLNDLLDQRLPPPVPHVEEELISVLKIARTCLSENPDSRPTMDMVSQSLSKLMI 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8872833 8876270 + Conep17aG0125600.1 Cone17ag1225 456702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1225 979 Pfam Leucine rich repeat 484 544 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 316 629 - -
Cone17ag1225 979 ProSiteProfiles Protein kinase domain profile. 707 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1225 979 SUPERFAMILY Protein kinase-like (PK-like) 691 974 IPR011009 -
Cone17ag1225 979 SUPERFAMILY RNI-like 311 596 - -
Cone17ag1225 979 Gene3D Ribonuclease Inhibitor 184 287 IPR032675 -
Cone17ag1225 979 Pfam Protein kinase domain 710 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1225 979 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Cone17ag1225 979 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 438 460 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 462 483 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 343 364 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 198 220 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 557 578 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 247 268 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 222 244 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 Pfam Leucine Rich Repeat 414 435 IPR001611 GO:0005515(InterPro)
Cone17ag1225 979 SMART LRR_sd22_2 292 318 - -
Cone17ag1225 979 SMART LRR_sd22_2 555 581 - -
Cone17ag1225 979 SMART LRR_sd22_2 196 217 - -
Cone17ag1225 979 SMART LRR_sd22_2 483 515 - -
Cone17ag1225 979 SMART LRR_sd22_2 220 246 - -
Cone17ag1225 979 SMART LRR_sd22_2 100 126 - -
Cone17ag1225 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 290 - -
Cone17ag1225 979 FunFam Nuclear pore complex protein NUP107 29 190 - -
Cone17ag1225 979 SMART LRR_typ_2 244 268 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 100 124 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 196 220 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 555 578 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 316 339 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 483 507 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 148 172 IPR003591 -
Cone17ag1225 979 SMART LRR_typ_2 531 554 IPR003591 -
Cone17ag1225 979 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Cone17ag1225 979 SUPERFAMILY L domain-like 52 379 - -
Cone17ag1225 979 Gene3D Ribonuclease Inhibitor 288 634 IPR032675 -
Cone17ag1225 979 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524(InterPro)
Cone17ag1225 979 Gene3D Phosphorylase Kinase; domain 1 667 783 - -
Cone17ag1225 979 Gene3D Transferase(Phosphotransferase) domain 1 784 979 - -
Cone17ag1225 979 CDD STKc_IRAK 713 977 - -
Cone17ag1225 979 FunFam MDIS1-interacting receptor like kinase 2 784 978 - -
Cone17ag1225 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1225 979 SMART serkin_6 707 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1225 979 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 272 382 - -
Cone17ag1225 979 FunFam Leucine-rich repeat receptor protein kinase MSP1 668 783 - -
Cone17ag1225 979 PRINTS Leucine-rich repeat signature 534 547 - -
Cone17ag1225 979 PRINTS Leucine-rich repeat signature 555 568 - -
Cone17ag1225 979 ProSiteProfiles Leucine-rich repeat profile. 485 507 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0539 Cone-Chr10:2517054 Cone17ag1225 Cone-Chr17:8872833 9.34E-224 dispersed
Cone17ag1225 Cone-Chr17:8872833 Cone17ag1259 Cone-Chr17:9063232 1.32E-164 dispersed
Cone17ag1224 Cone-Chr17:8867978 Cone17ag1225 Cone-Chr17:8872833 4.62E-150 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82281 PF00010 HLH 4.90E-06 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1225 - - - 0.0