Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1230 ATGGATTTTCAGAATAGTAACAGAGTTGAATCAGGCGGCGGCACATCGTCGGCGTTTGGTGGTGAGTTGATGGAAGCACTTGCGCCTTTTATGAAAAGTGCTTTTCCAACTTCATCTCTTCCTCCTTCCTCAACCCCATTTCCTTCTACTACTGCGTCTCTCTCCTTTCCTTCCGTCCAAACACAGCCCGCTTATTCATACCCAGACGGTTGCTCGACGTCGTCGTCGGCCCATTTGTTTTCAGACGGGTTCTCGGCCCAACAAAGCCTTTTCGGTTTTGATCAACCATCTGGGTCCGAGCGTGGGCTCAACCAATTAACCCAACCTCAGATCTACAAGATCCAAACTCAAATGCCTTCCCAAATAGAATGGGCCCAGCCCAATCATCACCAACTGCTTCCAGAGTACCGGCCCAACACCCTCAGCTTCTTAGGCACAAAACCCGTTTTGATGAAGCAGTCGGGTTCTCCTCCGAAGCCCGTTAAGCTTTACCGGGGGGTCCGGCAACGGCATTGGGGAAAATGGGTTGCCGAGATCCGACTTCCGAGGAACCGGACCCGGCTCTGGCTCGGCACCTTCGACACGGCTGAAGAAGCCGCCTTAGCCTACGACAGGGCGGCTTATAAGCTGCGAGGCGATTCGGCTCGGCTCAATTTTTCTCATCTCAAGGACCAAATCTCCTCCGAATTCGGCGGCGATTTCAAGCCGCTCCATTCATCTGTTGATGCGAAGCTTGAAGCCATTTGTGAAAGCTTGGTGAAATCAGAGAAACAGGGAAAGAAAAAAAAGGAGGAAACCAGGTCCGCCGGCAAGAAGTCGCGGACGGCGGTGGTTGCGAGGGATGAGAATCAGAAAGAGAAGGTGGAAGTGGGAATGAAGGTTGAGTATTCATCAAGTGATGGGTCTGGTGGGTCAACTTCTTCGCCATTGTCGGATCTTACTTTTCCTTCCAATCTGACAGAGACGGCATGGGATCATCTTCAATCTTCGGAGAATTTCACGTTGGAGAAATACCCGTCTGAGATTGATTGGGATTCTATATTTACTTAA 1050 50.76 MDFQNSNRVESGGGTSSAFGGELMEALAPFMKSAFPTSSLPPSSTPFPSTTASLSFPSVQTQPAYSYPDGCSTSSSAHLFSDGFSAQQSLFGFDQPSGSERGLNQLTQPQIYKIQTQMPSQIEWAQPNHHQLLPEYRPNTLSFLGTKPVLMKQSGSPPKPVKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAYKLRGDSARLNFSHLKDQISSEFGGDFKPLHSSVDAKLEAICESLVKSEKQGKKKKEETRSAGKKSRTAVVARDENQKEKVEVGMKVEYSSSDGSGGSTSSPLSDLTFPSNLTETAWDHLQSSENFTLEKYPSEIDWDSIFT 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8918498 8920402 - Conep17aG0126100.1 Cone17ag1230 456707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1230 349 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1230 349 MobiDBLite consensus disorder prediction 256 293 - -
Cone17ag1230 349 FunFam Ethylene-responsive transcription factor 2 162 221 - -
Cone17ag1230 349 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1230 349 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1230 349 MobiDBLite consensus disorder prediction 298 315 - -
Cone17ag1230 349 CDD AP2 162 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1230 349 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677(InterPro)
Cone17ag1230 349 Pfam AP2 domain 163 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1230 349 Gene3D AP2/ERF domain 163 221 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1230 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 347 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone17ag1230 349 MobiDBLite consensus disorder prediction 256 315 - -
Cone17ag1230 349 SMART rav1_2 163 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1230 K09286 - - mdm:103441637 283.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1336 Cone-Chr10:10433573 Cone17ag1230 Cone-Chr17:8918498 9.31E-31 dispersed
Cone15ag0246 Cone-Chr15:1160793 Cone17ag1230 Cone-Chr17:8918498 3.54E-33 dispersed
Cone17ag1230 Cone-Chr17:8918498 Cone6ag0849 Cone-Chr6:4331686 9.05E-36 dispersed
Cone17ag1230 Cone-Chr17:8918498 Cone20ag0497 Cone-Chr20:2660368 1.88E-193 wgd
Cone17ag1230 Cone-Chr17:8918498 Cone4ag1350 Cone-Chr4:11006044 7.72E-86 wgd
Cone17ag1230 Cone-Chr17:8918498 Cone6ag1574 Cone-Chr6:12274587 2.01E-61 wgd
Cone17ag1230 Cone-Chr17:8918498 Cone7ag1581 Cone-Chr7:10838004 3.23E-90 wgd
Cone17ag1230 Cone-Chr17:8918498 Cone9ag1493 Cone-Chr9:10975569 1.03E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45100 PF00155 Aminotran_1_2 1.10E-97 CL0061 Cone TF