Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1246 ATGCCATCTTTGTTGGAGCAGGCGACAGATTACACGCTTGTTGGACTTTTTGATGGATTGCGACCCACCAACCCGCTTTCTGATGCTTTCATTTTCTTGAGAGCATGGTGGGAGTATAATGACGTTAACGGAAGTGCCGTAGCAGGTGAGAAATCATTCAATCTCTCTCGGTTGATTGAAGAAACTTACGGTGGTGGAGGAGGAGGAGGAGTTCTCGCAGTTCATCCACACTCAGGTGACAGTTTTCTTGGTATGTTACTGTTCTTTATTCTGAATATCTATGGTCTCAGGACAAGTAATTCTATCGGAAGTATGAGCTCTCCATCAACTCAACTTTCACCTTCAACAAGGATGGGTATCTACGAGCCACTTCATCAGATTACTCATTGGGGAAATTCCTTCAAGGGTCACAGTAACTTAGACCCGAGCACATCAGCTATGGTAAAGGTGAATCCTATTCCTATCCTAAACAGTAAGCATGAATGCCTTTCCCCTGAATCAAAGGAACAATTGATGAGCAATCAAGGGACGTCGTCCCGCAGATCAATTGATAAGATACAGAGACGTTTGGCACAAAATCGAGAAGCTGCTCGTAAAAGTCGTATACGGAAAAAGGCTTATGTCCAACAATTAGAAACGAGCCGATTAAAACTGGCACAGTTAGAGCAGGAACTAGAGAGAGCCAGACAGCAGGGTGTATATGCAATAGATACTAGTCACTTGGGATTGTGTGGAACAGTAAACCCAGGAATTGCTGCATTTGAGATGGAGTACTATCATTGGGTTGACGAGCAAAACAAACAGATCTGTGAACTCCGGAGTGCATTGCAAATTCCCATAAGTGATATAGATCTTCACATTCTGGTCGACAGTGGTTTCAACCACTACTACAATCTTTTCCGCATGAAAGCAGATGCCGCAAAGGCTGATGTTTTCTACCTATTGTCAGGACTGTGGGTCACATCAGCCGAGCGCTTTTTCCTCTGGATTGGAGGTTTCCGCCCTTCGGAGATTCTAAATATACTGATTCCACATTTAGAGCCCTTAATGGATCAACAAGTACCAGAAATTTGTAACCTCAAACAATCATCTCAACAAGCAGAAGAGGCTCTCTCAGGAGGAATGGATAAACTGAACCAGACTCTGGCTCATAGCATATCGGCCGATACAGAAACAGTAGACAAAATGGAAGCTTTGGAGAGCCAGCCGAGTGTGTGTTGCTCTTTTCTGGAACAGGCGGACCATCTGAGGCAACAAACCTTGCGAAGGATGTCTCGTATTTTAACAACGAACCAGGCGGCCAGGGCCCTTATAGCCCTAGGGGAGTACTTTCACCGTCTTCGTGCTCTGAGCTCGCTCTGGGCGGCTCGACCCCATGAACAACCTGTCTAA 1392 45.4 MPSLLEQATDYTLVGLFDGLRPTNPLSDAFIFLRAWWEYNDVNGSAVAGEKSFNLSRLIEETYGGGGGGGVLAVHPHSGDSFLGMLLFFILNIYGLRTSNSIGSMSSPSTQLSPSTRMGIYEPLHQITHWGNSFKGHSNLDPSTSAMVKVNPIPILNSKHECLSPESKEQLMSNQGTSSRRSIDKIQRRLAQNREAARKSRIRKKAYVQQLETSRLKLAQLEQELERARQQGVYAIDTSHLGLCGTVNPGIAAFEMEYYHWVDEQNKQICELRSALQIPISDIDLHILVDSGFNHYYNLFRMKADAAKADVFYLLSGLWVTSAERFFLWIGGFRPSEILNILIPHLEPLMDQQVPEICNLKQSSQQAEEALSGGMDKLNQTLAHSISADTETVDKMEALESQPSVCCSFLEQADHLRQQTLRRMSRILTTNQAARALIALGEYFHRLRALSSLWAARPHEQPV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8978604 8981624 - Conep17aG0127700.1 Cone17ag1246 456723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1246 463 FunFam BZIP family transcription factor 184 233 - -
Cone17ag1246 463 SUPERFAMILY Leucine zipper domain 185 226 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1246 463 CDD bZIP_HBP1b-like 185 234 - -
Cone17ag1246 463 ProSiteProfiles DOG1 domain profile. 251 457 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone17ag1246 463 Coils Coil 204 231 - -
Cone17ag1246 463 PANTHER TRANSCRIPTION FACTOR TGA9 105 461 - -
Cone17ag1246 463 Gene3D - 184 233 - -
Cone17ag1246 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1246 463 Pfam bZIP transcription factor 185 222 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1246 463 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1246 463 SMART brlzneu 181 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1246 463 Pfam Seed dormancy control 268 343 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1246 Cone-Chr17:8978604 Cone8ag0792 Cone-Chr8:7958365 5.12E-106 dispersed
Cone17ag1246 Cone-Chr17:8978604 Cone20ag0480 Cone-Chr20:2568276 8.18E-232 wgd
Cone17ag1246 Cone-Chr17:8978604 Cone4ag1363 Cone-Chr4:11088249 2.91E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45102 PF07526 POX 6.80E-22 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1246 K14431 - vvi:100255706 434.876