Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1248 ATGAAAGTGCTCTCGCTAGGGTTTCTCTCACCTTCCATCACTTTCTCTCCATCGCCTTCATTTCTTTCCATTCCACCATTGAAACCAGTCAAACCCAGAAACAGCTCCGTATCAAACCCTGCTGCTAATCCTAATCATGCAACAGAGGTTACTGACTTCCGGAGTTTTTACCGTAGAAGAGGAAGACGATCTTCAACGACCCTTTCCGAGAATACGAGCGAAGAATCTGTCTCCCAAGAAAACCTAGATGCTGAATTTTCGGATAATCAGTCGGTGAGTCAGTTCCCATGTTCTGATTTACTTGCGCTATGGCTTCAATCTTCTAGCAGTGTGGATGAGGTTAGAAGAATACATGCCTTCTCCATGAAAATGTTAAAAAATCCGGTTATTTATGTTGGCAATAATTTGATCAATTCGTATGTAAGAGTGGGGAAGCTGGTTCATGCACGCAAAATATTCGACCAAATGCCTGAAAGAAATGTGGTTACTTGGACTGCTATTATAAATGGGTATCTTAATTTTGGTTTTGATGATGAGGCTTTAAGGCTTTTTCATGCTTCCATTAAGAACAAAATCCGGGCAAATGCAAAAATGTTAGTGTGCATATTAAATCTTTGTAGCAAGATATCAGATTTCGAGCTCGGGAAACAAGTCCATGCTTGTGTTATCAAAGGTAATTGGAAAAACTTGATTTTAGATAGCTCAATTGTTTACTTCTATGCTCATTGTGAAGATCTCACTAGTGCTTTTATCGCCTTTAATCAAATGCCCAAACGGGATGTTATTTGTTGGACCTCTATGATCACGGCCTGTTCCCGACAAGGGCACGGGCAAGAAGCTTTATCCATGTTCTCACAAATGCTAAGCCACGTATTTTCTCCAAACGAATTCACAATTTGTGGTATTTTAAAGGCTTGTGGGGATGAAAAGGAATTAAGATTCGGGAAACAATTACATGGCATGATAGTTAAGAAGGTAGTCAAGAATGATGTTTATATCGAGACTTCTCTAGTAGACATGTATGCAAAATGTAGAGATATGATCGATTCAAGAAGAGTGTTTGATCAAATGAGGAAGAGAAATACGGTTACATGGACATCAATTATAGCGGGATATGCTCGGGAAGGGCTAGGAGAGGATGCTATAAGCCTCTTTAGACTGATGAAGAGGAGGAAAATTTTTTCGAATAACCTGACTATAGTAAGCATTCTTAGGGCTTGTGGGTCAATTGGGGATTCATTGATAGGAAGAGAAGTTCATGCTCAAATTTTTAAAAACTCCATCCAAGATGATATGTATATAGGAAGTACCCTTGTGTGGTTGTATTGTAAATGTGGAGAGTATCCTAGTGCTGCCATGGTCCTTAAGCAAATGCCCTTCAGAGATGTAGTCTCTTGGACCGCTATCATTTCAGGTTGTGCTAGTCTAGGACTCGAGCCAGAAGCGCTCGAGTTTCTAAAACAAATGGTCGAGGAAGGAGTAGAACCCAACTCGTATACTTATTCTTCGGCTTTGAAAGCTTGTGCTAAGTCAGAATATATTCTTCAAGGAAGATTGATTCACTCTTCAGCTAAGAAAACCCTAGCTTTCTCAAATGTGTTTGTTGGCAGTGCTTTGATTTTCATGTATGCAAAATGTGGATATGTAGATGAGGCATTCCAAGTTTTCGATAATATGCCGGAGAGGAATTTGGTTTCTTGGAAGGCTATGATTTTGGGTTATGCAAGGAATGGCCTTTGCCGGGAAGCTATGAAGCTTATGTATCGGATGAGAGCCGAGGGGTTCGAAGTGGATGATTATATTCACGCTATGGTTTATGGGGCTTGTGGAGATATTAAGTATGAAACGGAAGAGGAGGTTTCATGTGATTTCAACAAGTTTGTGTCTAGTTGA 1893 40.1 MKVLSLGFLSPSITFSPSPSFLSIPPLKPVKPRNSSVSNPAANPNHATEVTDFRSFYRRRGRRSSTTLSENTSEESVSQENLDAEFSDNQSVSQFPCSDLLALWLQSSSSVDEVRRIHAFSMKMLKNPVIYVGNNLINSYVRVGKLVHARKIFDQMPERNVVTWTAIINGYLNFGFDDEALRLFHASIKNKIRANAKMLVCILNLCSKISDFELGKQVHACVIKGNWKNLILDSSIVYFYAHCEDLTSAFIAFNQMPKRDVICWTSMITACSRQGHGQEALSMFSQMLSHVFSPNEFTICGILKACGDEKELRFGKQLHGMIVKKVVKNDVYIETSLVDMYAKCRDMIDSRRVFDQMRKRNTVTWTSIIAGYAREGLGEDAISLFRLMKRRKIFSNNLTIVSILRACGSIGDSLIGREVHAQIFKNSIQDDMYIGSTLVWLYCKCGEYPSAAMVLKQMPFRDVVSWTAIISGCASLGLEPEALEFLKQMVEEGVEPNSYTYSSALKACAKSEYILQGRLIHSSAKKTLAFSNVFVGSALIFMYAKCGYVDEAFQVFDNMPERNLVSWKAMILGYARNGLCREAMKLMYRMRAEGFEVDDYIHAMVYGACGDIKYETEEEVSCDFNKFVSS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8986190 8988082 + Conep17aG0127900.1 Cone17ag1248 456725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1248 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Cone17ag1248 630 FunFam Pentatricopeptide repeat-containing protein 307 416 - -
Cone17ag1248 630 Gene3D Tetratricopeptide repeat domain 224 316 IPR011990 GO:0005515(InterPro)
Cone17ag1248 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Cone17ag1248 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Cone17ag1248 630 MobiDBLite consensus disorder prediction 62 81 - -
Cone17ag1248 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Cone17ag1248 630 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 417 516 - -
Cone17ag1248 630 Pfam PPR repeat 134 161 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat 537 563 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat 565 595 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat 436 459 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat 162 186 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat family 461 510 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat family 259 306 IPR002885 -
Cone17ag1248 630 Pfam PPR repeat family 360 407 IPR002885 -
Cone17ag1248 630 PANTHER OS01G0913400 PROTEIN-RELATED 329 517 - -
Cone17ag1248 630 MobiDBLite consensus disorder prediction 66 81 - -
Cone17ag1248 630 NCBIfam pentatricopeptide repeat 565 598 IPR002885 -
Cone17ag1248 630 NCBIfam pentatricopeptide repeat 262 296 IPR002885 -
Cone17ag1248 630 NCBIfam pentatricopeptide repeat 464 498 IPR002885 -
Cone17ag1248 630 NCBIfam pentatricopeptide repeat 538 565 IPR002885 -
Cone17ag1248 630 NCBIfam pentatricopeptide repeat 134 162 IPR002885 -
Cone17ag1248 630 NCBIfam pentatricopeptide repeat 363 394 IPR002885 -
Cone17ag1248 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Cone17ag1248 630 Gene3D Tetratricopeptide repeat domain 67 223 IPR011990 GO:0005515(InterPro)
Cone17ag1248 630 Gene3D Tetratricopeptide repeat domain 523 628 IPR011990 GO:0005515(InterPro)
Cone17ag1248 630 Gene3D Tetratricopeptide repeat domain 415 522 IPR011990 GO:0005515(InterPro)
Cone17ag1248 630 Gene3D Tetratricopeptide repeat domain 317 414 IPR011990 GO:0005515(InterPro)
Cone17ag1248 630 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 517 617 - -
Cone17ag1248 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 562 IPR002885 -
Cone17ag1248 630 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 192 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1248 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1248 Cone-Chr17:8986190 Cone5ag1416 Cone-Chr5:8867654 1.90E-84 dispersed
Cone17ag1248 Cone-Chr17:8986190 Cone19ag0653 Cone-Chr19:5569211 1.99E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g351 . . . . . . . . . . . . . . . . . Bhi04g02501 . . . Hepe02g3441 . Lcy10g2332 . . . . . . . . . Cone17ag1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00766 . . . . . . . . Chy03g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012853 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 27