Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1260 ATGAGTGGAGACCGATGTCACCGGCAAGAGAAGATGATGGGTAGGGGTGCCGACGGAGGTTGTGGCACCGAGGAGCGGTCTTGCCCCATTTCTAGGGTCCCGGCGAGATTTCCGGCGGAAGAACCGGAAATTCCGGAGAAGACGACTTCGGTGTCCGTAGACTTCTTCACGCAGGCTCATAAGGCTCTGAGCGAGCTCTCGCCATTTGATGTCCCAGATGAGGCCACAGCTTCGGCTTCAGCTAGTACTTCAACAGTGCTCACTTTGCCTTCTGGGCTGGCAAAATTCCTTGCAAGGAGTTCTCACAGTCGAAGAAAGCATAAGAAGTCTCATTCAGGTGCTGACAAGAAGTCATCTAGGCAGGGTGAGAAGTCGCGTGGTTACAATATTTGGGGTGAGACTGAGGAGTATTTCAGAGACTTGACAAAGCTCGACATAGAAGCTTTGTCTGAGGTATCTTCCTTAAGTGCTATATGTGAAAACATGTTCTTTATAATTCCCGTTTTGGGCAGCGGTCGTAGCTCAAATGCGGGTTCCCGAGTGAATGTTATTATTAATGGCGGGAATGAGAATGACGTTCTTGTTGAAGAGGAGGTTGAGAAGGAGGATGAGCTGCCCCTTGAAACTGATATGGGGGAAGCAGAGACTCTGCCTCAAGAGGATGATATGATTTGTTCTGTTTCGGATATATCCCATGGTTTAGAGTGGCTTTTAGGTTGTAGGAATAAGGTATCCTTAACTTCGGAGCGTCCTTCAAAGAAGCAGAAGCTCTTGGGTAGCGATGCAGGATTGGACAAAGTTGTTACTCTTCCTTGCGAAGGGAATTCATCGCAATGTCACTTTTGCTCTAAGGGCCGGGATATGGTTGGAGAGTCGAACTCATTAGTTGTTTGCAGAAATTGTAAGGTTGAAGTGCACCAGAAGTGCTATGGTGTTGTGGAGGAGATTACTGGGTCTTGGCTGTGTAATTGGTGTAGGCAAGTAGATGATGACAGCAAGGATTCTTTAAAGCCTTGTGTGCTTTGTCCGAAGCAGGGTGGTGCGTTAAAGCCTGTTCATAAGAATGTTAAAAATGAAGGGTCTGTGGAATTTGCTCATTTATTTTGTAGTCAGTGGATGCCTGAGGTATACATAGAGGACTTGAAGCAGATGGAGCCCATTATGAATGTGGAAGGAATAAAGGAAACTCGGAGAAAATTGGTTTGTAACGTATGCAAGGTGAAGTGTGGTGCTTGTGTTCGTTGCAGTCATGGAACGTGCAGGACTGCCTTCCATCCTATATGTGCAAGGGAGGCTAGACACAGAATGGAAGTTTGGGGAAGATATGGGAGTGATAATGTTGAGCTTCGTGCTTTCTGTTCGAAGCACTCAGAAGTGGTGGATTGTAGTACTGATCCAAAATTACAAGATCACTCTGAATCTATTGTGGGAGAATCCTGCGTTGTCAATCCTCTTCCAGTCACATTATCGATTAACAGGCCACATAAGTTGGTTATTGGCCTGAGAAATGGAGATGATATTGCACTTCCTGTGGAAACTCCTGATCCTGATTCTAACAAATTGGCTGATGATGTTTTGAAAGAGGTGGGATTGGCTCATTCTAGGTTAGACGCACGCCAGGTAGCAAAATTTGATGATTCGCAGAATTCAACTGCTATGGGAACATCCCAGAAGGGAGACGAGGATGTAAGCTCGTCTGACTCCCTAAAATTTGCACCAATATTGAAAAAGTTGATTGATCGTGGAAAAGTCAATGTCAAAGATGTAGCATCACAGATTGGATTATCCCCTGATACTTTAATTTCAAAACTTGCGGGCGACAACGTGATGCCTGACTTGGGACACAAAATTGTTAAATGGCTTAAAGCTCATGCTCATATAGGCAATCAACAGAAAAACTTGAGAGTTAAAATAAAATCAGCTGTTTTATCCAAAGATGATGGTGGAGCTACAGTTGGGTCTGATAAAGTAGGTCCCGGTGATGTAAGGTCAATACCTCCACGGAGAAGAACCAAAAATGATATTAGGGATTTCAAGTATAATGAAGTAACATGCTCATCTGAGGAAGCTTTAGGCAACGAAGAGATGGTATTGGAAAAACAAAGAGAAGATAAACTTGATGATGAAGAACCAGAAAGTTCAAGTAAAGAATCTGTGCCTGGGAACAATGAAAAGCACTCATCTGAGCAGAATGGGCTTCAGGATTCTTTACAAGGGCTTTTGTCCAATCGTGAAGGAAGCCCAGTTAAACTTTCAAATGGAAGTCCTTCCAAAGGTGATCAATTAGAGGAGGTTGGTATTTCTGACTTGAGTAACCTGAATGCAGATCACGAGGATTGTGCTTATTCAGTTGCCAATCCTGCTGTACCTGATCTGACAAAAGCAGGAGCATCTTCAAGTTCTTACATTCATCCGTATATCCAGAATCAATTTTTGCAAATGCGTAGTGGCTGTACTGATGGAGTAATGTCTCGTGTGGTTGAATCTTCCAAAACAAGTGTTTGCTGTATTCATGAGAATCAACACTCGGAGTGTAGTGACAGAGAGGGGAAATCTGATTGTACAAATCTAGATCAATTGGTCAGGGCTAGGAGAATGGGAGTTCTGGAACTTCATCCTGAAGATGAAGTGGAGGGAGAACTTATATACTATCAGCAGAGGTTACTGGCTAATGCAGTTGCAAGAAAGCAGTTTACTGATAATCTAATTCATAATGTCTCTAAGAGCCTGCCAAAAGAGGTTGATGGTACTAGGAGTCAAAGATGGAATGCCGTGCTCGTAAACCGATATCTTTCTGAGCTTAGAGAGGCAAAAAAGCGGGGTAAGAAAGAGAGGAGACATAAGGAAGCACAGGCAGTACTTGCTGCTGCAACTGCTGCAGCTGCAGCCTCTTCTAGGATATCATCGTTAAGAAAAGACATATTTGATGAGTCTGTTAATCCAGAGAGTTTGTCGAAGTTGAACACTTCTAATGGAAGGGCTGGCATTTGCTCCCAGCTGATGCCTCGGCCAAAAGAGACTCTTCCGAAGGTTGCTCCCCTGAAGATTTCAGTGGAGAAGCATTCTGAATCAGTTCCATCAGTTTCAGATTTTTGTAAAGAACAACCCAGATCATGTGATATCTGCAGACGTTCCGAGACATCATTAAACCCGATCCTAGTCTGTTCCAGTTGCAAGGTTGCAGTTCACTTGGAATGCTATCGTACTGTTAAAGAGTCTTCAGGTCCATGGCATTGTGAGCTATGTGAAGAATTATCAACATCAAAAAGTGCTGGAGTTCCAGCTGTCAATTTTTGGGATAAGCCGTACTTCGTGGCAGAGTGTGGCTTATGTGGTGGGAGCACTGGTGCCTTCAGGAAATCATCAGATGGCCAATGGGTCCATGCCTTCTGTGCAGAGTGGGTATTTGAATCAACTTTCAGAAGGGGACAGTCGAACTCTGTTGAAGGAATGGAGACTGTTTCAAAGGGAGTTGATGTCTGTCATATTTGCCGTCGCAGCCATGGTGTCTGTATAAAGTGTAACTATGGCCATTGCCAATCCGCTTTCCATGCTTCCTGTGCAAGAAGTGCTGGTTTCTACATGAATACGAGGATTTCTGGTGGCAGATTGCAACACAAGGCATACTGTGAAAAGCATAGCTCAGAGCAAAGGGCAAAGGCTGAAAACCAAACACATGGAATTGAGGAGCTGAAAAGAATTAAGCAAATACGGGTTGAATTGGAGAGGTTACGCCTTCTTTGTGAACGAGTTATCAGACGTGAGAAATTAAAGTGA 3777 44.08 MSGDRCHRQEKMMGRGADGGCGTEERSCPISRVPARFPAEEPEIPEKTTSVSVDFFTQAHKALSELSPFDVPDEATASASASTSTVLTLPSGLAKFLARSSHSRRKHKKSHSGADKKSSRQGEKSRGYNIWGETEEYFRDLTKLDIEALSEVSSLSAICENMFFIIPVLGSGRSSNAGSRVNVIINGGNENDVLVEEEVEKEDELPLETDMGEAETLPQEDDMICSVSDISHGLEWLLGCRNKVSLTSERPSKKQKLLGSDAGLDKVVTLPCEGNSSQCHFCSKGRDMVGESNSLVVCRNCKVEVHQKCYGVVEEITGSWLCNWCRQVDDDSKDSLKPCVLCPKQGGALKPVHKNVKNEGSVEFAHLFCSQWMPEVYIEDLKQMEPIMNVEGIKETRRKLVCNVCKVKCGACVRCSHGTCRTAFHPICAREARHRMEVWGRYGSDNVELRAFCSKHSEVVDCSTDPKLQDHSESIVGESCVVNPLPVTLSINRPHKLVIGLRNGDDIALPVETPDPDSNKLADDVLKEVGLAHSRLDARQVAKFDDSQNSTAMGTSQKGDEDVSSSDSLKFAPILKKLIDRGKVNVKDVASQIGLSPDTLISKLAGDNVMPDLGHKIVKWLKAHAHIGNQQKNLRVKIKSAVLSKDDGGATVGSDKVGPGDVRSIPPRRRTKNDIRDFKYNEVTCSSEEALGNEEMVLEKQREDKLDDEEPESSSKESVPGNNEKHSSEQNGLQDSLQGLLSNREGSPVKLSNGSPSKGDQLEEVGISDLSNLNADHEDCAYSVANPAVPDLTKAGASSSSYIHPYIQNQFLQMRSGCTDGVMSRVVESSKTSVCCIHENQHSECSDREGKSDCTNLDQLVRARRMGVLELHPEDEVEGELIYYQQRLLANAVARKQFTDNLIHNVSKSLPKEVDGTRSQRWNAVLVNRYLSELREAKKRGKKERRHKEAQAVLAAATAAAAASSRISSLRKDIFDESVNPESLSKLNTSNGRAGICSQLMPRPKETLPKVAPLKISVEKHSESVPSVSDFCKEQPRSCDICRRSETSLNPILVCSSCKVAVHLECYRTVKESSGPWHCELCEELSTSKSAGVPAVNFWDKPYFVAECGLCGGSTGAFRKSSDGQWVHAFCAEWVFESTFRRGQSNSVEGMETVSKGVDVCHICRRSHGVCIKCNYGHCQSAFHASCARSAGFYMNTRISGGRLQHKAYCEKHSSEQRAKAENQTHGIEELKRIKQIRVELERLRLLCERVIRREKLK 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9066778 9075195 - Conep17aG0129100.1 Cone17ag1260 456737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 647 676 - -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 743 762 - -
Cone17ag1260 1258 Coils Coil 931 951 - -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 543 562 - -
Cone17ag1260 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1016 1091 IPR013083 -
Cone17ag1260 1258 Pfam PHD-zinc-finger like domain 338 456 - -
Cone17ag1260 1258 Pfam PHD-zinc-finger like domain 1107 1213 - -
Cone17ag1260 1258 ProSiteProfiles Extended PHD (ePHD) domain profile. 336 457 IPR034732 -
Cone17ag1260 1258 ProSitePatterns Zinc finger PHD-type signature. 1039 1082 IPR019786 -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 99 114 - -
Cone17ag1260 1258 ProSiteProfiles Zinc finger PHD-type profile. 276 328 IPR019787 -
Cone17ag1260 1258 ProSitePatterns Zinc finger PHD-type signature. 279 325 IPR019786 -
Cone17ag1260 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 333 IPR013083 -
Cone17ag1260 1258 ProSiteProfiles Extended PHD (ePHD) domain profile. 1105 1214 IPR034732 -
Cone17ag1260 1258 ProSiteProfiles Zinc finger PHD-type profile. 1036 1085 IPR019787 -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 716 733 - -
Cone17ag1260 1258 SUPERFAMILY FYVE/PHD zinc finger 1029 1084 IPR011011 -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 98 126 - -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 743 759 - -
Cone17ag1260 1258 PANTHER PHD FINGER PROTEINS 196 1016 IPR050701 GO:0006357(PANTHER)
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 662 676 - -
Cone17ag1260 1258 SMART PHD_3 1160 1214 IPR001965 -
Cone17ag1260 1258 SMART PHD_3 401 457 IPR001965 -
Cone17ag1260 1258 SMART PHD_3 1038 1083 IPR001965 -
Cone17ag1260 1258 SMART PHD_3 278 326 IPR001965 -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 1 51 - -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 542 565 - -
Cone17ag1260 1258 Pfam PHD-finger 1050 1083 IPR019787 -
Cone17ag1260 1258 Pfam PHD-finger 293 325 IPR019787 -
Cone17ag1260 1258 SUPERFAMILY FYVE/PHD zinc finger 267 327 IPR011011 -
Cone17ag1260 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1105 1216 IPR013083 -
Cone17ag1260 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 459 IPR013083 -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 693 715 - -
Cone17ag1260 1258 CDD ePHD 1108 1213 - -
Cone17ag1260 1258 MobiDBLite consensus disorder prediction 689 733 - -
Cone17ag1260 1258 Coils Coil 1234 1254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1260 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1260 Cone-Chr17:9066778 Cone20ag0468 Cone-Chr20:2459873 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44