Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1266 ATGGCTAAACCCAGAAATCAAAGACACCTCATCAAGAAAACCCACCAGCCAGAAAAGACTAAAAACCAACCATCTTGGGCTGTTTTCAAGGGCCTCATTCTAAGCTGCAAGTATCTCCAGCCACAACAACAGCAACCAAAACCCCACAAAATGATCCAAAAACAGCATCAAAAGGAACAATCCATGGAAAAAAGTGGGAAAAGGAGCAAGAAAATGAAGTGCTCTGGCTCTTTATGTAACAACACAAATGTGTTGCAGAGGCCAGAAACAGAGTCCCCTGAATTTCAAAAAAACAGAGCTTTTTCAAGCAACGCTGCATCTTCATCTAATAGATTTCTTAGAGAAATCAATGGAGTGATTTTAGCTTCTTCTTCTTCTTCTTCTTCTTCATTGTCTACGTCTTCTTCTACTCAGTCCTCTTCCATTGCAGGGTCCTTTAGAGCAATGCCTTTCAGGAGATTCTCTGGTTGTTATGAATGTAAAATGGTGGCTGATCCTTCTCTTGGAATCACTAGAGAACCTTCTTCTCTTAGATCAAGCATTTTTCCTTGTATTGATTGTGGTGAAATTTTCATTAAATCTGAAGATTTGGAGCTTCATCAAGCTATTACTCATGCAGTATCCGAAGTTGTTCCGGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCAAGCTGGTTAAGAAAGCAAACCCCAATTTGCAAAATAGACAGAATTCTCAAGGTCCACAATACCCAAAAGACCATCTCAAGGTTTGAAGAATATAGAGATTCCATTAAGACCGAGGGTAATAAGGTCCCGAAGAAACACCCCCGTTGTATAGCGGATGGGAACGAGCTTCTCCGGTTCCACTCCACCACCTTGGCATGTTCATTGGGTCTAAATGGGTCCACCAATCTTTGTAATTCAATCGCACATTGTGATGTTTGTAGAATTATAAAGGACGGGTTTGAGGTTGTCAGAATGGAGGAGGGTAGGGGGATTTTCACCAGCGCGACTAGCGGCAATGCACACGATAAGGCAGTGGAGGTGGCGGCAGGAGGTGGTGGTGGGGATAAAAGGGTGATGCTGGTTTGTAGGGTTATTGCTGGAAGAGTGAAGAGGGGTTTGGAGGTGGTGGAGAGTAGTATGAAGGAGTATGACTCTATAGGTTGGGGTGTGGGTGCTTATTCCAATTTGGATGAGTTGTATGTGTTTAACCCAAAGGCTATTTTGCCTTGTTTTGTTGTTGTCTATAGTGGATTTTAA 1254 42.34 MAKPRNQRHLIKKTHQPEKTKNQPSWAVFKGLILSCKYLQPQQQQPKPHKMIQKQHQKEQSMEKSGKRSKKMKCSGSLCNNTNVLQRPETESPEFQKNRAFSSNAASSSNRFLREINGVILASSSSSSSSLSTSSSTQSSSIAGSFRAMPFRRFSGCYECKMVADPSLGITREPSSLRSSIFPCIDCGEIFIKSEDLELHQAITHAVSEVVPEDTSKNIVEIIFQSSWLRKQTPICKIDRILKVHNTQKTISRFEEYRDSIKTEGNKVPKKHPRCIADGNELLRFHSTTLACSLGLNGSTNLCNSIAHCDVCRIIKDGFEVVRMEEGRGIFTSATSGNAHDKAVEVAAGGGGGDKRVMLVCRVIAGRVKRGLEVVESSMKEYDSIGWGVGAYSNLDELYVFNPKAILPCFVVVYSGF 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9127782 9129225 + Conep17aG0129700.1 Cone17ag1266 456743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1266 417 MobiDBLite consensus disorder prediction 52 70 - -
Cone17ag1266 417 ProSitePatterns Zinc finger C2H2 type domain signature. 184 205 IPR013087 -
Cone17ag1266 417 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 25 414 - -
Cone17ag1266 417 SUPERFAMILY ADP-ribosylation 207 416 - -
Cone17ag1266 417 MobiDBLite consensus disorder prediction 74 102 - -
Cone17ag1266 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 210 IPR013087 -
Cone17ag1266 417 MobiDBLite consensus disorder prediction 1 23 - -
Cone17ag1266 417 MobiDBLite consensus disorder prediction 41 102 - -
Cone17ag1266 417 Gene3D - 206 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1118 Cone-Chr14:9313725 Cone17ag1266 Cone-Chr17:9127782 2.45E-72 dispersed
Cone15ag1134 Cone-Chr15:9227314 Cone17ag1266 Cone-Chr17:9127782 8.94E-27 dispersed
Cone17ag1266 Cone-Chr17:9127782 Cone4ag1968 Cone-Chr4:13835607 2.97E-92 dispersed
Cone17ag1266 Cone-Chr17:9127782 Cone4ag1379 Cone-Chr4:11178786 6.85E-117 wgd
Cone17ag1266 Cone-Chr17:9127782 Cone7ag1552 Cone-Chr7:10684926 8.32E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45103 PF13359 DDE_Tnp_4 2.60E-15 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1266 - - - 0.0