Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1267 ATGGACATCACCCGAATCACCATGGCTCTGCGCCATTGCATTCAAATACGAGCTCTCAATCATGGAATGACAATACACTCTCACTTGATCAAATTAGGAGGATTAAGCAACACATTCCTCGCTAACAACCTGATCTCAGTGTATATCAAATCTTTCAACTTGCACTATGCAAATAAACTGTTCGATGAAATGCCTCAGAGAAACATCATTACATGGACCACCATGGTCTCTGCTTATACAGATGTCGGAAGACCCTCTGAAGCTCTCCAACTATACAACGAGATGCTAGACTCAAAATCTGAGACCCCGAATGGATTCATGTACTCTGCCGTTTTAAAAGCATGTGGTCTTCTGGGTGATCTTCAATTAGGTAAGTCAATTTCTGAACACATATTTAGAGACAATTTAGAAGCTGATATGATTTTAATGAACTCCCTTCTAGACATGTTTGTTAAATGCGGAAGTTTGAATGATGCTCAAAAGGTGTTTGATAAAACTTTATGTCCAAACACAACTTCTTGGAACACAATGATTTCGGGTTATGCTAAAGCCGGTTTGCTGCATAAAGCAGTGAATATTTTTCATTCCATGCCAAAAAGAAATGTTGTATCTTGGAATAGCATTATTTCCGGTTTTACAGATACGGAAAGCTTGCGTGCATTGGAATGTGTTGCTATGATGCATAAAGAAGGTTTTAAGCTTGATGAGTTCACATTCCCTTGTGCTCTTAAAACATGTGCTCTTCATGGTCTACTATCTTTTGGGAAAGAACTCCATTCTTATGTAATCAAGCTTGGTTTCGAATCTAGTTGCTTCAGTTTGTCTGCTCTTATCGATATGTATTCTAATTGCAATTCACTAAGTGAAGCAGTTAATTTATTTGGCAAAAAGAATCTGGTTTCTAACAACTTAGCATTATGGAATTCCATTCTTTCCGGATACATTATTAACAATCATTACCATGAAGCTTTCGATGTTGTTTTGAAAATTTATCACTCGGGTTCATACTTTGACTCCTATACATTTAGTGGTGCTTTAAAAGTTTGCATCAACTTATCAAGCTTGAAATTTGGGCGTCAAGTACATAGTATGGTTGTTATTTACGGGTATGAGTTAGATTATATTGTAGGAAGCATTCTTATAGATCTCTATGCAAAGTTGGGTTGTATTAATGAAGCGTTAGGCTTGTTCAATCGCCTTCCAAAGAAAGATACCATAGCTTGGTCCGGATTGATAATGGGATGTGCCCAAATGGATTTAAACCGATTAGCTTTTTCGTTATTCAAAGACATGGTCAATTTGGGTCTTGAAATCGATCATTTTCTTGTTTCAACTATTTTGAAAGTTTGCTCTACCTTGGCTTCTATTACAAGTGGAAGATTGGTTCATTGTTTCTGTATCAAGAAGGGGTATGAGTTAGAGAAGGTTACTGTAACTTCTCTTATTGATATGTACTCAAAATGTGGAGAAATCCAAGATGGGTTGGTTTTATTCGGTTCAATGCCAGAGAAGGACACGGTTAGTTGGACAGGGATTATTGTAGGGTGTGGCCAAAATGGAAGAGCCAAGGAAGCAATTAGACTGTTCTATAGAATGATTGACTTAGGGATTGAGCCTAATGAAATCACCTTTTTAGGCGTTCTTTCTGCGTGTAGACATGCCGGTTTAGTTAAAGAAGCACAAATTATTTTTGATTCGATGAAAGTTGAATTCGATTTGGAACCATATTTAGAGCATTATTGTTGTATGGTTGATGTTTTAGGTCAAGCGGGTTTTGTGAAAGAAGCCAAGGATTTGATTGTTGATATGCCATTTGAGCCGACAAAGGCCACTTGGAATATTCTGCTAGGTGCTTGTGGGGCACACAAGAATAGGGAGGTCGTTGAGTTTATCGTGGATCGGGTTAAAGCTCTTGATCCGGTCATGGAAGATCCATCGAGTTATGTGACTCTTTCAAATACTTATGGGTCGATTGGTATATGGGATGAGCTTGGGAAAGTGAGAGAGGCTGCTAAGAAAATGGGTGTTAAAGAAGCTGGAATAAGCTGGATTGAGATTTCTAGCTAA 2067 38.03 MDITRITMALRHCIQIRALNHGMTIHSHLIKLGGLSNTFLANNLISVYIKSFNLHYANKLFDEMPQRNIITWTTMVSAYTDVGRPSEALQLYNEMLDSKSETPNGFMYSAVLKACGLLGDLQLGKSISEHIFRDNLEADMILMNSLLDMFVKCGSLNDAQKVFDKTLCPNTTSWNTMISGYAKAGLLHKAVNIFHSMPKRNVVSWNSIISGFTDTESLRALECVAMMHKEGFKLDEFTFPCALKTCALHGLLSFGKELHSYVIKLGFESSCFSLSALIDMYSNCNSLSEAVNLFGKKNLVSNNLALWNSILSGYIINNHYHEAFDVVLKIYHSGSYFDSYTFSGALKVCINLSSLKFGRQVHSMVVIYGYELDYIVGSILIDLYAKLGCINEALGLFNRLPKKDTIAWSGLIMGCAQMDLNRLAFSLFKDMVNLGLEIDHFLVSTILKVCSTLASITSGRLVHCFCIKKGYELEKVTVTSLIDMYSKCGEIQDGLVLFGSMPEKDTVSWTGIIVGCGQNGRAKEAIRLFYRMIDLGIEPNEITFLGVLSACRHAGLVKEAQIIFDSMKVEFDLEPYLEHYCCMVDVLGQAGFVKEAKDLIVDMPFEPTKATWNILLGACGAHKNREVVEFIVDRVKALDPVMEDPSSYVTLSNTYGSIGIWDELGKVREAAKKMGVKEAGISWIEISS 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9130587 9132798 - Conep17aG0129800.1 Cone17ag1267 456744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1267 688 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 197 - -
Cone17ag1267 688 Pfam PPR repeat family 504 551 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat family 67 115 IPR002885 -
Cone17ag1267 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Cone17ag1267 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Cone17ag1267 688 Gene3D Tetratricopeptide repeat domain 356 463 IPR011990 GO:0005515(InterPro)
Cone17ag1267 688 Gene3D Tetratricopeptide repeat domain 121 259 IPR011990 GO:0005515(InterPro)
Cone17ag1267 688 Gene3D Tetratricopeptide repeat domain 260 355 IPR011990 GO:0005515(InterPro)
Cone17ag1267 688 FunFam Pentatricopeptide repeat-containing protein At2g34400 463 688 - -
Cone17ag1267 688 Pfam PPR repeat 378 403 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat 307 328 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat 173 202 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat 407 436 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat 579 603 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat 273 295 IPR002885 -
Cone17ag1267 688 Pfam PPR repeat 143 165 IPR002885 -
Cone17ag1267 688 FunFam Pentatricopeptide repeat-containing protein At3g49710 119 253 - -
Cone17ag1267 688 Gene3D Tetratricopeptide repeat domain 481 688 IPR011990 GO:0005515(InterPro)
Cone17ag1267 688 Gene3D Tetratricopeptide repeat domain 1 120 IPR011990 GO:0005515(InterPro)
Cone17ag1267 688 NCBIfam pentatricopeptide repeat 70 101 IPR002885 -
Cone17ag1267 688 NCBIfam pentatricopeptide repeat 507 541 IPR002885 -
Cone17ag1267 688 NCBIfam pentatricopeptide repeat 173 203 IPR002885 -
Cone17ag1267 688 FunFam Pentatricopeptide repeat-containing protein 19 118 - -
Cone17ag1267 688 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 357 457 - -
Cone17ag1267 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Cone17ag1267 688 Pfam E motif 622 685 IPR046848 -
Cone17ag1267 688 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1267 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1267 Cone-Chr17:9130587 Cone19ag0653 Cone-Chr19:5569211 3.07E-113 dispersed
Cone17ag1267 Cone-Chr17:9130587 Cone6ag1599 Cone-Chr6:12395229 1.87E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g312 . Blo12g00682 . Bda03g00524 . Bpe04g00478 . . . . Cma01g01403 Cma09g00811 . . . Cpe06g00645 Cpe07g00146 . . . . . . . Cla08g01128 Cam08g1584 Cec08g1154 Cco08g1280 Clacu08g1284 . Cre08g1066 Cone4ag1380 Cone7ag1551 Cone17ag1267 . Lsi04g02374 Csa04g01819 . . . . . . . . . . . Cmo01g01453 Cmo09g00804 . . . Car09g00726 . Cpe02g00539 Bhi09g02645 . . . Hepe01g2262 Mch11g0812 . Cla11g01520 Cam11g1580 Cec11g1609 Cco11g1608 Clacu11g1736 Cmu11g1554 Cre11g1972 Lsi08g00985 . Chy07g00668 Cme07g00876
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009162 1 3 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31