Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1271 ATGAAGGGTGCCGTTGAACTGATTGAGAGGGTAGACAATGGAGACAAGGATAAGAAGAAGAAGCGCAGACCTCATCGGCGATCGAAGCAGAACGCTTCTTCTTCTTTTTCTATCTCAGGTATAATTTGCATTCTGACTTCTCTAATCTTGTATTTCAGTAAACAGATTCCTGAGGGAGCATCGGAGTGCTTGTCAAGTTGTAGGGCAGATAACCCTGAAACAAACAGCCTAAATTCTTCTTCTTCTGAGCAACACGAGTTCAACACACCACCTCAAGATGACTGTGTGTTGACTAAAGAAACTGAAGTTTCTTTCAGTTCTTTGCCAATTATGCATACTGATGAACAGTTGGAGTCCCTGAAGATACAGAATAGAAAAAATAAGCATCTTTCCTTGACCAATGTTGGCGGTCGATTAGTTTTGACATCTTGCTCTAAGCCAATTTCTTGTGGAGGGCAATCTAGACCTCCTCCTTATCAAATTGAAGATCATCATCAAAAGAAATACTTTCCTCCGCACTGGTCCATGGAGGCTGTTAATGAGGCAGTACAGAAAGGTGATGCATTTAAAGCTTTATTCCGGGTCAATGCTCACAATAGACTTGAGGCCTATTGCAGTATTGATGGGGTGCCAATTGATGTTCTCATTAGTGGAGTTGCTTCTCAGAATAGAGCAATGGAAGGAGATCTGGTAGTGGTGACTATTGACCGTTTGTCATTATGGGCCAAGCTGAAAGGGTCCATTGATAATTGTAATAATTCATCTTCAGTGGAAGATGGTAACTTGGTTCTTGAAGATAATTGTAGAGGGGGTCAGAGTTGCAAAGGCAAAAGTATGGTAGATACAAATTGTGACTGTGATGATCTTCTTACAAATTCTCAGACTTTGCACAACAGATTGTGTGAATCGAATAAAAAGGTATTAGATGAAACCCTTCATGCGGAAGTTCTAAGTTCTGCTAGTGAAAATGAAGTTTCAGGAACCATTGTGAGGTTGTGTGCTATGATTAACTCATTCCCTTCAAGAAGACCAACTGGTCGGGTAGTAGCAATCATTGAAAGGTCTCCACGGAGAGATGCTGTTGTTGGCTTTCTTAATGTCAAGCAATCCCTCTCTTACAGGGAGTGTTGTGGAGATGAAATCCAGAATAAGGGTGTATTGTCATTCTCCAATAATCAGTACATTCACTTAATACCAACTGACCCAAGATTCCCCAAAATGGATGTCTTTGTGCGTGATCTACCTGATGCCATCAAGAAGAAATTGGAGTCTGGTGATGCAGAAATTGAAACTGAGTTGGTAGCAGCACAAGTGGATGATTGGAGTGAATATAGTTCTGCTCCACTAGCTCTTGTCTCCCAAATTTTTGGTCAGGCTAGTGAAATGGAGTCACAGATTGATGCAATTTTATTTGAGAATGCTGTTCAATCTGGTGAATTCTCTGAGGATGCACTTTCTTGCCTTCCAAAAACCACTTGGCAGATTCCACCTGGGGAATTTCAGAGTAGAAGAGACCTTAGAAATTTATGTGTGTTTACTATTGATCCTTCCACTGCAACGGATCTAGATGATGCTCTCAGTGTAGAGAGTTTAGACAATGGTATGTACAGAATAGGTATTCACATTGCTGACATGTCATATTTTGTTTTGCCTGACACAGCCTTGGATGTAGAAGCCATGTTCCGGTCAACAAGTGTCTATTTACTGCAGTACAAGATACCAATGTTACCTCCATTGCTCTCTGAGGATATTGGTTCCCTCAACCCAGGAGTGGATAAACTCGCATTTTCTATGTTTTTTGACATTAACCATGCCGGGGATGTTTTAGACCGTTGGATTGGCCACACTGTTATATGTTCTTGCTGCAAACTTTCATATGACCATGCACAGGACATTATTGATGGGTTAGTGCATCCAGACAATTCAAATGGGTTAAGAAATGGATGTTGTCCGCAATTGCACGGCCAATATAAATGGTCAGATGTGACTGCATCTGTCAAAACTCTTAATGAAGTTTCCAAAGTGTTGAGAGATAAGAGATTTAGCTCCGGGGCATTACAACTTGAAACCCCTGAATTATATTTCCTTTTTGATGAGTACGGAGTTCCATATGATTCTATGCTTTCAGAACTGAAAGAGTCAAACTTTCTTGTTGAGGAATTTATGCTCTTAGCAAATTCAACTGCTGGTGAGGTCATATCCCGTGTTTTCCCGGATAATGCATTACTTAGAAGACACCCTGAACCTAATTCGAGGAAGCTAAGAGAATTCGAAGCATTTTGTTCCAAACATGGTTTAGAATTGAAAACGTCTTCTTCTGGGCAGTTCCATCAGTCTCTGGAGTTAATCAGGCAAAAACTCAAGGGTGATTCTTTTCTTTCGGATATTCTCATGTCTTACGCTTCAAAGCCAATGCAGATGGCAAACTACTTTTGTACGGGGGAGTTGAAAGATAACGAGAAAGAGTGGAGTCATTTTGCTCTAGCTGTTCCACGATACACTCATTTCACATCACCGATACGTAGATATCCTGATATTCTAGTACATCGAATGCTAACAGCAGTGATTGAGGCTGAGGAGTTCTTTCTTAAGCATCAAAGGACATTACAGAAAGCTGAAAGAGGGGAGATGGCGAGAAGAAAATGTTTTACTGGGGTTCAATTTGATAAACATGCTGCAGAATCCATTGAAGGTAGGGAAGCTTTATCTGCAGCAGCACAAAGGCATAGAGTTCCTTGCACTGAATCACTTTCCATAGTTGCTTCCCATTGCAATGACAGAAAATTGGCTAGTAGGCGTGTTAAGGATGCTTGTGATAAGCTCTGCATGTGGGCCCTGTTAAGGAAGGAGGAGATCTTACTCTCAAGAGCAAGAGTTATGGGTCTTGGTCCAAGATTCATGTCTGTATACATCCATAAGTTTGGTATTGAGCGGCGAATACATTATGATGAAGTAGAAGGCCTGACAGTGGAATGGCTTGCAACTACTTCCACATTGGTGCTCAGTTTCTGTCCTAACAGGCGTACAAATAGGAGAGGGAGTGGGCCAAGTAGATGGAGGCCCATTGAAGATGTTGCTCTGCTTGTTACTCCTCTTGAAGGGAGTCCTAATACTGAAATTGAAGCTGCAGTTTTTCCATTCACTTTACCTCTCCTCTCCACAATCCCTGTTGCTCTTCATGCAGTTGGTGGGGATGATGGACCGCTCGATATTGGGGTTAGGCTGTACATGAGTTCTTATTTCACTTAA 3249 41.55 MKGAVELIERVDNGDKDKKKKRRPHRRSKQNASSSFSISGIICILTSLILYFSKQIPEGASECLSSCRADNPETNSLNSSSSEQHEFNTPPQDDCVLTKETEVSFSSLPIMHTDEQLESLKIQNRKNKHLSLTNVGGRLVLTSCSKPISCGGQSRPPPYQIEDHHQKKYFPPHWSMEAVNEAVQKGDAFKALFRVNAHNRLEAYCSIDGVPIDVLISGVASQNRAMEGDLVVVTIDRLSLWAKLKGSIDNCNNSSSVEDGNLVLEDNCRGGQSCKGKSMVDTNCDCDDLLTNSQTLHNRLCESNKKVLDETLHAEVLSSASENEVSGTIVRLCAMINSFPSRRPTGRVVAIIERSPRRDAVVGFLNVKQSLSYRECCGDEIQNKGVLSFSNNQYIHLIPTDPRFPKMDVFVRDLPDAIKKKLESGDAEIETELVAAQVDDWSEYSSAPLALVSQIFGQASEMESQIDAILFENAVQSGEFSEDALSCLPKTTWQIPPGEFQSRRDLRNLCVFTIDPSTATDLDDALSVESLDNGMYRIGIHIADMSYFVLPDTALDVEAMFRSTSVYLLQYKIPMLPPLLSEDIGSLNPGVDKLAFSMFFDINHAGDVLDRWIGHTVICSCCKLSYDHAQDIIDGLVHPDNSNGLRNGCCPQLHGQYKWSDVTASVKTLNEVSKVLRDKRFSSGALQLETPELYFLFDEYGVPYDSMLSELKESNFLVEEFMLLANSTAGEVISRVFPDNALLRRHPEPNSRKLREFEAFCSKHGLELKTSSSGQFHQSLELIRQKLKGDSFLSDILMSYASKPMQMANYFCTGELKDNEKEWSHFALAVPRYTHFTSPIRRYPDILVHRMLTAVIEAEEFFLKHQRTLQKAERGEMARRKCFTGVQFDKHAAESIEGREALSAAAQRHRVPCTESLSIVASHCNDRKLASRRVKDACDKLCMWALLRKEEILLSRARVMGLGPRFMSVYIHKFGIERRIHYDEVEGLTVEWLATTSTLVLSFCPNRRTNRRGSGPSRWRPIEDVALLVTPLEGSPNTEIEAAVFPFTLPLLSTIPVALHAVGGDDGPLDIGVRLYMSSYFT 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9158190 9163005 - Conep17aG0130200.1 Cone17ag1271 456748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1271 1082 SMART RNB_2 503 858 IPR001900 GO:0003723(InterPro)|GO:0004540(InterPro)
Cone17ag1271 1082 Gene3D - 374 461 - -
Cone17ag1271 1082 FunFam DIS3-like exonuclease 2 159 262 - -
Cone17ag1271 1082 Pfam Dis3-like cold-shock domain 2 (CSD2) 395 473 IPR041505 -
Cone17ag1271 1082 Pfam RNB domain 503 857 IPR001900 GO:0003723(InterPro)|GO:0004540(InterPro)
Cone17ag1271 1082 ProSitePatterns Ribonuclease II family signature. 825 849 IPR022966 -
Cone17ag1271 1082 SUPERFAMILY Nucleic acid-binding proteins 464 948 IPR012340 -
Cone17ag1271 1082 MobiDBLite consensus disorder prediction 1 32 - -
Cone17ag1271 1082 MobiDBLite consensus disorder prediction 72 93 - -
Cone17ag1271 1082 SUPERFAMILY Nucleic acid-binding proteins 345 476 IPR012340 -
Cone17ag1271 1082 MobiDBLite consensus disorder prediction 1 18 - -
Cone17ag1271 1082 PANTHER RIBONUCLEASE 74 1079 IPR050180 GO:0000175(PANTHER)|GO:0000932(PANTHER)|GO:0006402(PANTHER)
Cone17ag1271 1082 SUPERFAMILY Nucleic acid-binding proteins 167 354 IPR012340 -
Cone17ag1271 1082 Gene3D - 160 265 - -
Cone17ag1271 1082 Hamap DIS3-like exonuclease 2 [DIS3L2]. 16 1057 IPR028591 GO:0000175(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1271 K18758 - - mdm:103448111 1248.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0878 Cone-Chr12:7822286 Cone17ag1271 Cone-Chr17:9158190 8.74E-80 dispersed
Cone17ag1271 Cone-Chr17:9158190 Cone8ag0909 Cone-Chr8:8809697 1.15E-80 dispersed
Cone17ag1271 Cone-Chr17:9158190 Cone20ag0455 Cone-Chr20:2336604 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43