Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1274 ATGGACGGCCATAAAAATAGTCAGGTGAAGCAGCTCATAAGAACTCAATCGTCACTGCTCCGTTCATCGTCGACCATACGATCGTCCATTCAGAGCCTCTCTTCCTTCACGGAGGATGACGCAAACGCAGCACAAGCTGACGTCCACGACGTAGAGGAAGAGGAAGAAGATAATAACCAGAAAATCAAAAAGCCCAACCGGTCCTGTTCGACGCCGAGAACCGGTTCGACCCGTTTCGTCAGCGACGCAATCGTTCTAATCTCGCTGGCTTGCTTCACTTTCTTCTCCCTCTTCTTCTTCTCCTTCTTCTTCTTCTACATGAGAAAAGAAGAAACCCCTACCTCAGAGAATTTCCTCCTCGCTCTAATATTCATCGCCATAACCCTCTTCTTCGCAAACAAGAACAAGAATCTGATCCACAAAACCCTCCCCTTAATCAAAAACCGGTTCGGCTTTTCCAAGCCGAATACAAAACAGGTCCAGTGGTTCATAGGAAACTCCTCAAACGAGGAAATCACCAAAAGAGCTCAACAGGCGGCGGAGGCGAAGAAGGTGGTGAGAGAAGGGGTGGAGTTTTACAGCAATGGAGATTACTACGAGGGGGAGTTTTACAGCGGAAAGTCCAATGGAAGTGGGGTCTACAATTACTTTGTAGAGGGAAGGTATGAAGGGGATTGGATCGATGGGTCGTATGATGGCTATGGGATAGAGAGCTGGGCGAGAGGGAGTAAGTATAGGGGACAGTATAAGCAAGGGTTGAGACATGGATATGGAGTTTACAGGTTTTATACAGGGGATTGTTATGCAGGGGAGTGGTTTAATGGGCAGAGCCATGGCGTTGGCGTTCAGACTTGCTCTGATAATAGTTCTTATGTTGGCGAGTTCAAGTTCGGTGTTAAACACGGCCTTGGTTGCTACCATTTTAGAAACGGAGATAGATATGCCGGAGAGTATTTCAACGACAAGATCCACGGATTCGGAGTATATCACTTTGCAAACAGTCATTGCTATGAAGGGTCGTGGCATGAAGGTCGTAAACAAGGCTATGGAATGTACACTTTCCGGAACGGAGAAGCTCGTTGTGGTGAATGGGATTCTGGAAAACTCAACCACCCTCAACACCCGTTAACCGGCTCCGTTCTTCGAGCGGTCCAGGCAGCTAGGAAGACGGCAGAGAATGTTGTTAGTCTTAGACGGGTGGATGAGCAACTGAATAGAGCAGTTGCCGGAGCAAATAGGGCGGCAACTGCTGCCAGAGTAGCGGCTGTTAAAGCCGTTCAGAATAAGATGAGTGGGAAATTTTCTGATGCGGATGTCGTTTGA 1323 48.0 MDGHKNSQVKQLIRTQSSLLRSSSTIRSSIQSLSSFTEDDANAAQADVHDVEEEEEDNNQKIKKPNRSCSTPRTGSTRFVSDAIVLISLACFTFFSLFFFSFFFFYMRKEETPTSENFLLALIFIAITLFFANKNKNLIHKTLPLIKNRFGFSKPNTKQVQWFIGNSSNEEITKRAQQAAEAKKVVREGVEFYSNGDYYEGEFYSGKSNGSGVYNYFVEGRYEGDWIDGSYDGYGIESWARGSKYRGQYKQGLRHGYGVYRFYTGDCYAGEWFNGQSHGVGVQTCSDNSSYVGEFKFGVKHGLGCYHFRNGDRYAGEYFNDKIHGFGVYHFANSHCYEGSWHEGRKQGYGMYTFRNGEARCGEWDSGKLNHPQHPLTGSVLRAVQAARKTAENVVSLRRVDEQLNRAVAGANRAATAARVAAVKAVQNKMSGKFSDADVV 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9171129 9173207 + Conep17aG0130500.1 Cone17ag1274 456751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1274 440 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 27 430 - -
Cone17ag1274 440 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 228 273 - -
Cone17ag1274 440 MobiDBLite consensus disorder prediction 34 74 - -
Cone17ag1274 440 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 193 289 - -
Cone17ag1274 440 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 286 372 - -
Cone17ag1274 440 Pfam MORN repeat 222 243 IPR003409 -
Cone17ag1274 440 Pfam MORN repeat 268 289 IPR003409 -
Cone17ag1274 440 Pfam MORN repeat 314 334 IPR003409 -
Cone17ag1274 440 Pfam MORN repeat 291 313 IPR003409 -
Cone17ag1274 440 Pfam MORN repeat 337 357 IPR003409 -
Cone17ag1274 440 Pfam MORN repeat 199 215 IPR003409 -
Cone17ag1274 440 Pfam MORN repeat 245 266 IPR003409 -
Cone17ag1274 440 SMART morn 243 264 IPR003409 -
Cone17ag1274 440 SMART morn 335 356 IPR003409 -
Cone17ag1274 440 SMART morn 197 219 IPR003409 -
Cone17ag1274 440 SMART morn 266 287 IPR003409 -
Cone17ag1274 440 SMART morn 220 241 IPR003409 -
Cone17ag1274 440 SMART morn 289 310 IPR003409 -
Cone17ag1274 440 SMART morn 312 333 IPR003409 -
Cone17ag1274 440 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 274 319 - -
Cone17ag1274 440 Coils Coil 41 61 - -
Cone17ag1274 440 Gene3D - 320 385 - -
Cone17ag1274 440 Gene3D - 274 319 - -
Cone17ag1274 440 Gene3D - 229 273 - -
Cone17ag1274 440 Gene3D - 183 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1274 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1274 Cone-Chr17:9171129 Cone4ag0432 Cone-Chr4:1941004 5.49E-13 dispersed
Cone9ag0630 Cone-Chr9:2996608 Cone17ag1274 Cone-Chr17:9171129 5.39E-07 dispersed
Cone17ag1274 Cone-Chr17:9171129 Cone20ag0452 Cone-Chr20:2319023 1.62E-139 wgd
Cone17ag1274 Cone-Chr17:9171129 Cone4ag1389 Cone-Chr4:11220689 4.29E-74 wgd
Cone17ag1274 Cone-Chr17:9171129 Cone7ag1546 Cone-Chr7:10661023 2.30E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68