Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1286 ATGGAGTTGAAAACTCAAGTAATTGCAGAACAAGAAGAAATGAAGCAGCAGCAGCCGCAGCATTTCCATGTGTTAGCAGTCGATGATAGCATGATAGACAGAAAGCTCTTAGAGAGAATCCTCAGAATTTCCTCTTACAAAGTGACTTGTGTGGAATCTGGGTATAAAGCTCTGAAATTCTTGGGTCTACTTGATGATCACCAAAACGACGTTACTTCCTCTTCTTCCTCTCCTTCTCCTTCTTCATCTTGTTCTTTATATTCACCTCCTATGCTACCACAAAAAGAGGAATTAAAGGTTAATTTAATCATGACGGACTACTGTATGCCCGGGATGAGCGGCTATGATTTACTCAAGCGACTTAAGGGATCTTCATGGAAAGATGTACCAGTTGTTGTCATGTCTTCAGAAAACATACCCGAAATTATAAACATGTGTTTGGAAGGAGGGGCAGAGGAGTTCCTTCTGAAGCCGGTTCAGTTATCGGATGTGAAAAAGCTTAAGCCATACCTTCTTCGACACCAATATTCTTGTAAAGGAATCGAAGAGGAAGAAAATCAGGAGGAATTAACGGCTGAGATTAATGCCGATACTAGTAGTAGTAGTAGTAGTAGTAGTAGTCGTAGTGCTACTGTTATCATGGAAATTGAGAGACAATTGAGCATTATCAAATCATTCTTACTCATGTCTCTAGGGAAATAA 702 39.89 MELKTQVIAEQEEMKQQQPQHFHVLAVDDSMIDRKLLERILRISSYKVTCVESGYKALKFLGLLDDHQNDVTSSSSSPSPSSSCSLYSPPMLPQKEELKVNLIMTDYCMPGMSGYDLLKRLKGSSWKDVPVVVMSSENIPEIINMCLEGGAEEFLLKPVQLSDVKKLKPYLLRHQYSCKGIEEEENQEELTAEINADTSSSSSSSSSRSATVIMEIERQLSIIKSFLLMSLGK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9221135 9223107 + Conep17aG0131800.1 Cone17ag1286 456763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1286 233 SMART REC_2 22 168 IPR001789 GO:0000160(InterPro)
Cone17ag1286 233 SUPERFAMILY CheY-like 21 180 IPR011006 -
Cone17ag1286 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 209 IPR045279 GO:0009736(InterPro)
Cone17ag1286 233 CDD REC_typeA_ARR 24 167 - -
Cone17ag1286 233 Pfam Response regulator receiver domain 96 165 IPR001789 GO:0000160(InterPro)
Cone17ag1286 233 ProSiteProfiles Response regulatory domain profile. 23 172 IPR001789 GO:0000160(InterPro)
Cone17ag1286 233 Gene3D - 23 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1286 Cone-Chr17:9221135 Cone19ag0548 Cone-Chr19:4566224 2.03E-54 dispersed
Cone17ag1286 Cone-Chr17:9221135 Cone20ag0441 Cone-Chr20:2226763 2.08E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45107 PF00063 Myosin_head 1.30E-229 CL0023 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1286 K14492 - vvi:100259216 233.417