Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1287 ATGGCGTCTATGTTTTCGATCTTTGTGTTTGTTTTAGCTCTTTTTGCTTCGTCTTTCTCTGAGATCTATGCGGAGGAGGCTGAGTCGAAGGAGTACGTGCTCACCTTGGACCATTCCAACTTCTCCGACACCGTAAGCAAGCACAATTTCATCGTCGTTGAGTTCTATGCGCCGTGGTGTGGACACTGCAAAAAACTAGCTCCAGAGTATGAAAAAGCTGCCTCTATCTTGAGTAGTCATGACCCACCTGTAGTTCTAGCAAAAGTTGATGCCAATGAGGAAGATAACAAAGGGATTGCAAATGATTTTGATATCAAGGGCTTCCCCACCATCAAGATTTTAAGAAATGGGGGCAAGACTGTTCAGGAATACAAGGGTCCTCGTGAGGCAGAAGGTATTGTAGAGTATTTGAAAAAACAAAGTGGGCCTTCATCTGCTGAAATAAAATCTGTAGAAGATGCTACAAATCTTATTGACGACACGAAGATAGTTATCGTTGGTGTGTTCACTAACTTTTCTGGGGAGGAATATGAGAGCTATATCTCGCTAACTGAGAAGTTGCGTTCTGAGTATGACTTTGCTCATACTTTGAATGCGAAACTACTTCCTCGCGGGGAATCATCAGTGACTGGTCCCTTAATCAGGCTATTCAAGCCATTTGACGAACTTTTTGTTGATTTCAAGGATTTTAATTTGGAAGCTTTGGAGAAGTTCATTGAACAATCTAGTCTGCCAATAGTAACTGTCTTCAACAATGACCCAAGCAATCACCCATACGTGATCAAGTTCTTCAATAATGCCAATGCAAAAGCCATGCTGTTTTTGAACTTTAGTACTGAGGTTGCCGATGTTTTGAAATCCAAATATCGTGAAGTTGCTGAGAAATTCCAAGGAGAGGGCATCAGCTTTCTAGTTGGAGATATTGAGGCTAGTCAAGGCGCCTTCCAGTATTTTGGACTTAAAGATGAGCAAGTGCCTCTAATTATTATACAAACCAGCGATGGGCAAAAATATTTGAAACCTAACGTGGAGCTTGATCAGATTGCTCCTTGGGTGAAGGAATACAAGGAAGGCAATGTGCTACCATACAAAAAGTCGGAAACTATCCCTGAGAAAAACGATGACCCTGTAAAAGTGGTTGTTGCTGACAGCCTCCATGACATAGTTTTCAACTCTGGAAAAAATGTTCTTCTGGAGTTTTATGCTCCCTGGTGTGGACACTGCAAACAGCTGGCTCCAGTCTTGGATGAGGTTGCTATCTCATTGGAAAAGGATCACGATGTCGTCATTGCTAAGATTGATGCTACTGCCAATGACTACCCGACTGAAGTCTTTGATGTTAAGGGTTACCCAACCATATACTTCAGATCATCCAGTGGAAAGATATCCCAGTACGATGGGGGTAGAACCAAGGAAGACTTCGTAGATTTCATTTATACAAACAGGGATAGACCCGACCAGTATGATTCAAGCTCAAAGGATGAGCAGACAGACTTTGTGGGGAAGGATGAGCTCTAG 1518 42.42 MASMFSIFVFVLALFASSFSEIYAEEAESKEYVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVVLAKVDANEEDNKGIANDFDIKGFPTIKILRNGGKTVQEYKGPREAEGIVEYLKKQSGPSSAEIKSVEDATNLIDDTKIVIVGVFTNFSGEEYESYISLTEKLRSEYDFAHTLNAKLLPRGESSVTGPLIRLFKPFDELFVDFKDFNLEALEKFIEQSSLPIVTVFNNDPSNHPYVIKFFNNANAKAMLFLNFSTEVADVLKSKYREVAEKFQGEGISFLVGDIEASQGAFQYFGLKDEQVPLIIIQTSDGQKYLKPNVELDQIAPWVKEYKEGNVLPYKKSETIPEKNDDPVKVVVADSLHDIVFNSGKNVLLEFYAPWCGHCKQLAPVLDEVAISLEKDHDVVIAKIDATANDYPTEVFDVKGYPTIYFRSSSGKISQYDGGRTKEDFVDFIYTNRDRPDQYDSSSKDEQTDFVGKDEL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9223963 9228729 - Conep17aG0131900.1 Cone17ag1287 456764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1287 505 CDD PDI_a_PDI_a'_C 376 478 - -
Cone17ag1287 505 NCBIfam protein disulfide-isomerase domain 381 479 IPR005788 GO:0003756(InterPro)
Cone17ag1287 505 NCBIfam protein disulfide-isomerase domain 37 140 IPR005788 GO:0003756(InterPro)
Cone17ag1287 505 NCBIfam protein disulfide-isomerase 32 505 IPR005792 GO:0003756(InterPro)
Cone17ag1287 505 ProSiteProfiles Thioredoxin domain profile. 13 142 IPR013766 -
Cone17ag1287 505 FunFam Protein disulfide-isomerase 11 140 - -
Cone17ag1287 505 MobiDBLite consensus disorder prediction 482 505 - -
Cone17ag1287 505 FunFam Protein disulfide-isomerase 242 371 - -
Cone17ag1287 505 ProSitePatterns Thioredoxin family active site. 397 415 IPR017937 -
Cone17ag1287 505 ProSitePatterns Thioredoxin family active site. 52 70 IPR017937 -
Cone17ag1287 505 Gene3D Glutaredoxin 246 371 - -
Cone17ag1287 505 SUPERFAMILY Thioredoxin-like 33 143 IPR036249 -
Cone17ag1287 505 FunFam Protein disulfide-isomerase 141 241 - -
Cone17ag1287 505 Gene3D Glutaredoxin 141 245 - -
Cone17ag1287 505 SUPERFAMILY Thioredoxin-like 148 253 IPR036249 -
Cone17ag1287 505 ProSiteProfiles Thioredoxin domain profile. 355 483 IPR013766 -
Cone17ag1287 505 SUPERFAMILY Thioredoxin-like 243 374 IPR036249 -
Cone17ag1287 505 PRINTS Thioredoxin family signature 104 115 - -
Cone17ag1287 505 PRINTS Thioredoxin family signature 59 68 - -
Cone17ag1287 505 PRINTS Thioredoxin family signature 51 59 - -
Cone17ag1287 505 CDD PDI_a_family 34 137 - -
Cone17ag1287 505 Pfam Thioredoxin-like domain 169 346 - -
Cone17ag1287 505 Pfam Thioredoxin 378 478 IPR013766 -
Cone17ag1287 505 Pfam Thioredoxin 33 139 IPR013766 -
Cone17ag1287 505 CDD PDI_b'_family 259 356 - -
Cone17ag1287 505 Gene3D Glutaredoxin 372 484 - -
Cone17ag1287 505 Gene3D Glutaredoxin 18 140 - -
Cone17ag1287 505 FunFam Protein disulfide-isomerase 372 485 - -
Cone17ag1287 505 SUPERFAMILY Thioredoxin-like 342 480 IPR036249 -
Cone17ag1287 505 CDD PDI_b_family 145 240 - -
Cone17ag1287 505 PANTHER PROTEIN DISULFIDE ISOMERASE 20 502 - GO:0003756(PANTHER)|GO:0005783(PANTHER)|GO:0006457(PANTHER)|GO:0034976(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1287 K09580 - - cit:102609645 763.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1287 Cone-Chr17:9223963 Cone5ag1229 Cone-Chr5:5661488 8.04E-71 dispersed
Cone19ag0340 Cone-Chr19:2749575 Cone17ag1287 Cone-Chr17:9223963 4.60E-29 transposed
Cone12ag1090 Cone-Chr12:8909577 Cone17ag1287 Cone-Chr17:9223963 6.45E-06 wgd
Cone17ag1287 Cone-Chr17:9223963 Cone20ag0440 Cone-Chr20:2221356 0 wgd
Cone17ag1287 Cone-Chr17:9223963 Cone4ag1414 Cone-Chr4:11313154 3.19E-109 wgd
Cone17ag1287 Cone-Chr17:9223963 Cone7ag1524 Cone-Chr7:10577119 5.05E-269 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48