Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1292 | ATGACGGAACCGATCAGTATCATGGACATCGACGACGATCCGAGCAGCAACAACCAGACTCTGAAGCCTAGTAAGGGCAAAAACGTCGTAGTCTCTGGCACTTCGCCGGACGGCAAGGCCACCCCTTGGGTCGAGAAGTACCGCCCTCAGTCCCTCGCTGACGTCGCCGCCCACCGTGACATTGTTGATACGATTGACAGGTTGACCAGCGAGAACAGGTTGCCACATCTCTTGTTGTATGGCCCACCTGGTACTGGTAAAACCTCGACTATTCTTGCTGTTGCACGGAAGCTCTATGGGTCACACTACCACAGTATGATATTGGAGCTGAATGCATCGGATGATAGGGGGATCGATGTTGTTAGGCAACAGATTCAAGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCAAAGGCTGCTGTGAAATTGGTATTATTAGATGAGGCGGATGCCATGACAAAAGATGCACAATTTGCCTTGCGTAGAGTGATCGAGAAATACACAAAGAACACGAGATTTGCTCTTATCTGCAATCATGTCAATAAGATCATTCCAGCGCTACAGTCAAGGTGCACTCGTTTTCGATTTGCTCCTCTTGATAGTTTTCATGTCTCTGAGCGACTCAAATATGTCATAGATTCCGAGGGGCTTGATGTACCTGAAAGTGGTTTAGCAGCACTTGTTCGGCTCAGCAGCGGTGACATGAGAAAGGCTTTGAATATCTTGCAGTCAACACATATGGCTTCACAGCAGATATCAGAAGAAGCTATATACCTGTGCACTGGAAATCCAATGCCCAAAGACATAGAGAAAATATCTTACTGGCTTCTGAATGAAACATTTGCAGAGAGCTTCAAAAGAATATCTGGAATGAAGGCATGCAAAGGGTTGGCTTTGGTTGATATCGTTAGAGAAGTGAATATGTTTGTTTTTAAAATCAAGATGCCATCAGAGGTTCGAGTTCAGTTGATCAATGATCTAGCTGACATAGAGTATAGGTTGTGTTTTGGGTGTAACGATAAGTTGCAACTCGGATCACTAATTGCTTGTTTTACACAGGCTCGATCCGCAATAGTTGCAGCAGCAGAGTAG | 1095 | 45.3 | MTEPISIMDIDDDPSSNNQTLKPSKGKNVVVSGTSPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGSHYHSMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKAAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDSFHVSERLKYVIDSEGLDVPESGLAALVRLSSGDMRKALNILQSTHMASQQISEEAIYLCTGNPMPKDIEKISYWLLNETFAESFKRISGMKACKGLALVDIVREVNMFVFKIKMPSEVRVQLINDLADIEYRLCFGCNDKLQLGSLIACFTQARSAIVAAAE | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9251825 | 9255289 | + | Conep17aG0132400.1 | Cone17ag1292 | 456769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1292 | 364 | Gene3D | - | 203 | 264 | - | - | |
Cone17ag1292 | 364 | FunFam | Replication factor C subunit 5 | 202 | 264 | - | - | |
Cone17ag1292 | 364 | CDD | AAA | 61 | 199 | - | - | |
Cone17ag1292 | 364 | Gene3D | - | 37 | 199 | IPR027417 | - | |
Cone17ag1292 | 364 | MobiDBLite | consensus disorder prediction | 11 | 35 | - | - | |
Cone17ag1292 | 364 | SMART | AAA_5 | 73 | 203 | IPR003593 | GO:0016887(InterPro) | |
Cone17ag1292 | 364 | Pfam | ATPase family associated with various cellular activities (AAA) | 77 | 199 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cone17ag1292 | 364 | Gene3D | - | 265 | 363 | - | - | |
Cone17ag1292 | 364 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cone17ag1292 | 364 | FunFam | Replication factor C subunit 5 | 265 | 362 | - | - | |
Cone17ag1292 | 364 | Pfam | Replication factor C C-terminal domain | 265 | 350 | IPR013748 | - | |
Cone17ag1292 | 364 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 41 | 258 | IPR027417 | - | |
Cone17ag1292 | 364 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 265 | 355 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Cone17ag1292 | 364 | FunFam | Replication factor C subunit 5 | 35 | 200 | - | - | |
Cone17ag1292 | 364 | CDD | HLD_clamp_RFC | 204 | 262 | IPR047854 | - | |
Cone17ag1292 | 364 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 41 | 356 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0326 | Cone-Chr12:1778705 | Cone17ag1292 | Cone-Chr17:9251825 | 8.95E-65 | dispersed | |
Cone17ag1292 | Cone-Chr17:9251825 | Cone4ag1422 | Cone-Chr4:11344487 | 1.71E-63 | dispersed | |
Cone17ag1292 | Cone-Chr17:9251825 | Cone20ag0436 | Cone-Chr20:2179466 | 2.72E-150 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1292 | K10756 | - | mdm:103441543 | 607.446 |