Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1292 ATGACGGAACCGATCAGTATCATGGACATCGACGACGATCCGAGCAGCAACAACCAGACTCTGAAGCCTAGTAAGGGCAAAAACGTCGTAGTCTCTGGCACTTCGCCGGACGGCAAGGCCACCCCTTGGGTCGAGAAGTACCGCCCTCAGTCCCTCGCTGACGTCGCCGCCCACCGTGACATTGTTGATACGATTGACAGGTTGACCAGCGAGAACAGGTTGCCACATCTCTTGTTGTATGGCCCACCTGGTACTGGTAAAACCTCGACTATTCTTGCTGTTGCACGGAAGCTCTATGGGTCACACTACCACAGTATGATATTGGAGCTGAATGCATCGGATGATAGGGGGATCGATGTTGTTAGGCAACAGATTCAAGATTTTGCTAGTACTCAAAGCTTCTCATTTGGGGCAAAGGCTGCTGTGAAATTGGTATTATTAGATGAGGCGGATGCCATGACAAAAGATGCACAATTTGCCTTGCGTAGAGTGATCGAGAAATACACAAAGAACACGAGATTTGCTCTTATCTGCAATCATGTCAATAAGATCATTCCAGCGCTACAGTCAAGGTGCACTCGTTTTCGATTTGCTCCTCTTGATAGTTTTCATGTCTCTGAGCGACTCAAATATGTCATAGATTCCGAGGGGCTTGATGTACCTGAAAGTGGTTTAGCAGCACTTGTTCGGCTCAGCAGCGGTGACATGAGAAAGGCTTTGAATATCTTGCAGTCAACACATATGGCTTCACAGCAGATATCAGAAGAAGCTATATACCTGTGCACTGGAAATCCAATGCCCAAAGACATAGAGAAAATATCTTACTGGCTTCTGAATGAAACATTTGCAGAGAGCTTCAAAAGAATATCTGGAATGAAGGCATGCAAAGGGTTGGCTTTGGTTGATATCGTTAGAGAAGTGAATATGTTTGTTTTTAAAATCAAGATGCCATCAGAGGTTCGAGTTCAGTTGATCAATGATCTAGCTGACATAGAGTATAGGTTGTGTTTTGGGTGTAACGATAAGTTGCAACTCGGATCACTAATTGCTTGTTTTACACAGGCTCGATCCGCAATAGTTGCAGCAGCAGAGTAG 1095 45.3 MTEPISIMDIDDDPSSNNQTLKPSKGKNVVVSGTSPDGKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGSHYHSMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKAAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDSFHVSERLKYVIDSEGLDVPESGLAALVRLSSGDMRKALNILQSTHMASQQISEEAIYLCTGNPMPKDIEKISYWLLNETFAESFKRISGMKACKGLALVDIVREVNMFVFKIKMPSEVRVQLINDLADIEYRLCFGCNDKLQLGSLIACFTQARSAIVAAAE 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9251825 9255289 + Conep17aG0132400.1 Cone17ag1292 456769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1292 364 Gene3D - 203 264 - -
Cone17ag1292 364 FunFam Replication factor C subunit 5 202 264 - -
Cone17ag1292 364 CDD AAA 61 199 - -
Cone17ag1292 364 Gene3D - 37 199 IPR027417 -
Cone17ag1292 364 MobiDBLite consensus disorder prediction 11 35 - -
Cone17ag1292 364 SMART AAA_5 73 203 IPR003593 GO:0016887(InterPro)
Cone17ag1292 364 Pfam ATPase family associated with various cellular activities (AAA) 77 199 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone17ag1292 364 Gene3D - 265 363 - -
Cone17ag1292 364 MobiDBLite consensus disorder prediction 1 42 - -
Cone17ag1292 364 FunFam Replication factor C subunit 5 265 362 - -
Cone17ag1292 364 Pfam Replication factor C C-terminal domain 265 350 IPR013748 -
Cone17ag1292 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 258 IPR027417 -
Cone17ag1292 364 SUPERFAMILY post-AAA+ oligomerization domain-like 265 355 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cone17ag1292 364 FunFam Replication factor C subunit 5 35 200 - -
Cone17ag1292 364 CDD HLD_clamp_RFC 204 262 IPR047854 -
Cone17ag1292 364 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 356 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0326 Cone-Chr12:1778705 Cone17ag1292 Cone-Chr17:9251825 8.95E-65 dispersed
Cone17ag1292 Cone-Chr17:9251825 Cone4ag1422 Cone-Chr4:11344487 1.71E-63 dispersed
Cone17ag1292 Cone-Chr17:9251825 Cone20ag0436 Cone-Chr20:2179466 2.72E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1292 K10756 - mdm:103441543 607.446