Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1306 ATGCAGGCTTTTGGCTGCCTTTTCCTTTTATCTCTTTTATTAATCTTCTCTTCCTCCTCTTCGTATGCTCTCTCCCATGCGGAAGCTTCATATATCGCACGCCGGCAGTTATTGACCTTGGACGAGACTCATCACAACTTGGATCATCACATAAATGAGACTTTTGTAAATGACAGGCTTAGAGGGGCCTACATTGCTCTCCAAGCATGGAAAAAGGCTATTTATTCGGACCCGTTTAACACGACAGCTAATTGGGTCGGTACCGATGTTTGTGCATATTCGGGGGTTTTTTGTGCGGAGGCGCTTGATGACCCGAAAGTGACTGTTGTGGCGGGAATTGATCTTAACCATGCTGACATCGCCGGTTACCTTCCCATTGAGTTGGGCTTATTAACGGACATTGCATTGTTTCATATCAATACAAACAGGTTTTGTGGGATCATTCCTAGGACTTTCTCGAACCTCAAGCTTCTTTTCGAGCTCGATGTTAGTAATAATCGGTTTGTGGGTCCATTCCCTACGGTTGTGTTAGAGCTTCCGACCCTTTCGTATCTTGACCTTAGATACAACAATTTTGAAGGTTGTTTGCCGGAAGAACTCTTTAATAAACAAATGGATGCCATCTTCTTGAACAACAATAGGTTTTCTTGCTCTATTCCGGAAACTATTGGAAACTCCTCGGTATCGGTCTTAGTCGTTGCCAATAACCATTTTACCGGGTGTATTCCGAGCAGCATTGGCAAAATGGAAAACACGTTGAACGAGATTATCTTCTTGAACAATGAATTTGTAGGATGTCTACCTCAAGAGATCGGCATGCTTGGAAATGTATCGGTGTTTGATATCGGGAATAACAATATCAGTGGACTCTTGCCCAAGACATTGAGTGGTCTTAAGAAGGTAGAACAGTTGGATGTCTCAAAGAATGTTTTCACCGGATTTGTTAATGAGAGCCTTTGCCAGTTGCCTAAATTGATCAACTTCACATTTTCTTACAACTATTTCAACGGGGAAGCTAAACAATGTAAGCCATGGTCAAGAAGGGGAGTTCTGTTGGATGATGTAAGCAATTGTTTACCGGATAGACCTAAACAAAAGCAGGAAAAGGAATGTACTCCAGTTGTGAGCAAGCCGGTCGATTGTGGGAAAGGGTTGTGTGGTGGCCGGCCGTCCCCATCACAGGTCAGTCCTACCCCGAACCCGCATCCTAACCCACCAAAACCACAACCTCCATCACCACCTGTAGCTCACTCTCCGGAGCCAACTCCAGGACACCCTTCACCTCCATCACCAGTTAATCCTACCCCGAACCCACAACCTCCATCACCACCTGTAGCTCCCTCTCCGAAGCCAACTCCAGAACACTCTTCACCACCAATCATACCGTCACCAGAGGATGAGCCCGAGCCTCCGAAACCATCAGCACCAGTTCCAAAATCGTCATTTGATGCTCCGGCACCTTCACCAACAGATGACCCAATTAAGGTATCACCGAGGCCTAGGACATCACCGGTTGAGACGCCACTGCCTCCAGTTCCCTCTCCCCCGCTACCACCTGTTCAATCCCCACCACCTCCGGTCCGCTCCCCACCGCCTCCGGTCCGCTCCCCACCTCCCGTTCAGTCACCCCTGCCCCCAGTCTACTCTCCACCGCCACATCCCATTCAGTCACCCCCGCTACCACCTGTTCATTCCCCACCACCTCCGGTTCAATCCCCACCGCCTCCGGTCCACTCCCCACCTCCCATTCAGTCACCCCCGCCTCCAGTCTACTCTCCACCGCCACCTCCCGTTCAGTCACCCCCGCCTCCGGTCTACTCTCCACCGCCACCTCCCGTTCAGTCACCCCCACCTCCGGTCTACTCTCCACCTCCACCTCCACCTCCCGTTCAATCACCTCCGCCTCCGGTCCACTCTCCACCGCCACCTCCCATCCAGTCACCCCCGCCCCCTCCCGTTCAGTCACCCCCGCCTCCAGTTCACTCTCCACCGCCACCTCCCATTCAGTCACCCCCGCCTCCGGTTCACTCTCCCCCGCCACCTCCCGTTCAATCATCCCCACCACCACCTCCATTTCAATCACCCCCACCACCAATTCAGTCTCCATCGCCACCTCCCGTTCAATCACCCCCACCACCACCTGCCGTTCATTCACCCCCACCACCGGTGAACTCACCACCACCACCTGTGCACTCCCCACCTCCTCCTTCCCCATCTCTTTCACCTCCTCCTCCTGTTTTCTCACCACCACCTCCTACGGAAGATATAATCCTACCACCCAATTTCGGCTCATCGTACATGTCCCCTCCTCCTCCAATATTCGCCGGTTACTAA 2334 51.89 MQAFGCLFLLSLLLIFSSSSSYALSHAEASYIARRQLLTLDETHHNLDHHINETFVNDRLRGAYIALQAWKKAIYSDPFNTTANWVGTDVCAYSGVFCAEALDDPKVTVVAGIDLNHADIAGYLPIELGLLTDIALFHINTNRFCGIIPRTFSNLKLLFELDVSNNRFVGPFPTVVLELPTLSYLDLRYNNFEGCLPEELFNKQMDAIFLNNNRFSCSIPETIGNSSVSVLVVANNHFTGCIPSSIGKMENTLNEIIFLNNEFVGCLPQEIGMLGNVSVFDIGNNNISGLLPKTLSGLKKVEQLDVSKNVFTGFVNESLCQLPKLINFTFSYNYFNGEAKQCKPWSRRGVLLDDVSNCLPDRPKQKQEKECTPVVSKPVDCGKGLCGGRPSPSQVSPTPNPHPNPPKPQPPSPPVAHSPEPTPGHPSPPSPVNPTPNPQPPSPPVAPSPKPTPEHSSPPIIPSPEDEPEPPKPSAPVPKSSFDAPAPSPTDDPIKVSPRPRTSPVETPLPPVPSPPLPPVQSPPPPVRSPPPPVRSPPPVQSPLPPVYSPPPHPIQSPPLPPVHSPPPPVQSPPPPVHSPPPIQSPPPPVYSPPPPPVQSPPPPVYSPPPPPVQSPPPPVYSPPPPPPPVQSPPPPVHSPPPPPIQSPPPPPVQSPPPPVHSPPPPPIQSPPPPVHSPPPPPVQSSPPPPPFQSPPPPIQSPSPPPVQSPPPPPAVHSPPPPVNSPPPPVHSPPPPSPSLSPPPPVFSPPPPTEDIILPPNFGSSYMSPPPPIFAGY 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9298742 9301485 - Conep17aG0133800.1 Cone17ag1306 456783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1306 777 MobiDBLite consensus disorder prediction 360 777 - -
Cone17ag1306 777 Pfam Leucine Rich Repeat 182 202 IPR001611 GO:0005515(InterPro)
Cone17ag1306 777 Pfam Leucine rich repeat 276 333 IPR001611 GO:0005515(InterPro)
Cone17ag1306 777 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 8 669 IPR051582 -
Cone17ag1306 777 SUPERFAMILY L domain-like 65 340 - -
Cone17ag1306 777 MobiDBLite consensus disorder prediction 503 757 - -
Cone17ag1306 777 PRINTS Proline rich extensin signature 405 421 - -
Cone17ag1306 777 PRINTS Proline rich extensin signature 391 403 - -
Cone17ag1306 777 PRINTS Proline rich extensin signature 429 441 - -
Cone17ag1306 777 PRINTS Proline rich extensin signature 442 463 - -
Cone17ag1306 777 Gene3D Ribonuclease Inhibitor 64 349 IPR032675 -
Cone17ag1306 777 FunFam Leucine-rich repeat extensin-like protein 1 64 225 - -
Cone17ag1306 777 MobiDBLite consensus disorder prediction 394 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0754 Cone-Chr16:8541821 Cone17ag1306 Cone-Chr17:9298742 3.56E-38 dispersed
Cone17ag1306 Cone-Chr17:9298742 Cone4ag1548 Cone-Chr4:11925894 4.45E-57 dispersed
Cone5ag1503 Cone-Chr5:10171994 Cone17ag1306 Cone-Chr17:9298742 4.50E-57 transposed
Cone17ag1306 Cone-Chr17:9298742 Cone20ag0166 Cone-Chr20:717390 1.80E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1306 - - - 0.0