Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1312 ATGCAATCCTTCCACCAAAGGAAGAACAACTCTCTCTCCCTCCAACCAATGACCAGAAAGAACCCACTTCTAGTCCTCTCCACCATTGTCATCATTCTCGTTCAACCGATCTCATCCGTTCATCACGCTCACTCCAAGTGCCAAAAATCATGCGGTCCCAAACACGGGCCAAAATATTTCCCCTACCCGTTCGGATTCTCCACCGGCTGCAAAATCCGCCTGAACTGCACCGAAATGGGCCGAGCCCAAATCGGCGAGTTTTCAGTCCAGTCCATTAGCTCCGAAAAAATCACCATCACCGTCGAAGCCAAATGCTACCGCCCCTTCCAATCCATCCATCAACTATTCAGCCGCAAGTACGCCCCGACCGTTCGAAACGCTATTCTTCTCCAAAACTGCAGTTCCGCAACTTCTCCGACCTGCGTTTTTCCTGTAGAAGCTACTACTGGTCAGACCAACTTCGAGACGCCAAATTGCGGTTTTAGCAACAGCAGCATAAGCTGCTATTCGCAAAAAGGAATCGATGGATTAATGAATTTCGAGAATTTGTCGACGAGTTTGCAGTGTGAGTACTTTCTCTCCGCCATTTCGGTGGCGCCGTTGTATAGGTCGGAGGCTGTTTCGACGTTGGAGGTTCAGACGATTGAGCTTGGCTGGTGGTTGGAGGGAAAGTGCCAGTGTGTTAGTGGAGCTAAGTGCGTCGAACTTGTTTCGCCTGTTAATGGTAGACCAGCGTTTCGGTGTGAGTGTCCGGAAGGTTTCCTCGGCGATGGATATTTGGCCGGAGACGGTTGCCGGAAAGTATCTGTTTCGCATTGCTACCCTGTCAAGTACATATATGGTGAATGTGGAGGCAGAACTAGAGTTCTAGTCCTAATTGGAGGTGTATTTGGAGGAGCGTTTTTAATGCTTAGTCTCGGCCTGATATGCTGCTTGGTTCGGTGGCAAACCAAACTCCGAGCCCAAACTGTGACCAAACGCCGGATAACCGAAGCAACACAAGGAAGTTGCATCATTCCAATATACACATACAAAGAAATTGAAAAGGCCACAAACAGTTTCTCAGACAAACAAAGGCTAGGAACGGGTGCATATGGAACAGTATATGCCGGAAAGCTACAAGGCGATCACGAATGGGTTGCCATAAAACGAATAAAAAACAGAGACAATGACACGATTGAGCAAGTCATGAATGAAATCAAACTCATTTCCTCTGTGACTCACCCGAATCTTGTCCGCCTTCTGGGTTGTTCTATCGAAAACAGTCAACAAATTGTAGTCTATGAGTTCATGCCTAATGGGACATTATACCAACACTTACAAAGAGAAAGAGGTGAAGGGCTCTCATGGCCAATTCGGGTTACAATTGCTACGGAAACTGCTAGAGCAATAGCTCATCTTCATTCCGCAATTAAACCTCCTATTTTTCATAGAGATATAAAATCAAGCAACATTCTGTTAGACTATAGCTTCAAATCCAAGGTTGCGGATTTTGGTCTATCAAGACTTGGTTTGACCGAAACGTCTCATATCTCGACTGCACCTCAAGGCACGCCTGGATATCTTGACCCACAGTATCACCAAGATTTCCATCTTTCTGATAAGAGTGATGTGTATAGTTTCGGTGTAGTTCTTGCGGAGATGTTAACAGGTTTGAAAGTTGTGGACTTCTCCCGTCCAAAATATGAAGTGAACTTAGCCGCTCTAGCTACAGATAGAATTGGAAACGGGTGTTTGGACGAGATCATAGACCCGATTCTATACCCGCATGAGGATGCTTGGACTCTTCTGTCAATGCATAAAGTAGCAGAGATTGCATTTCGATGTTTAGCATTTCATAGAGACATGAGGCCTTCTATGATGGAAGTTGCGGCAGAATTAGAAGAGTTAAGGCTAAGTAGATGGACACATTCAATTTCCGGGGTGAAAAATTATGATTCAGAGTTAGGAGTTCCAGGGCTGTCTACTTGTTGTTCTTCATTATCTGATTCAAGCGGAAAGGTACTAAGTTGCAGGGTAGATAAGGAGGTTGATGGAGATGGTTTCTTTCATTCCATGGATAAAATGAAGGATAATTCACCTGTTTCAGTTCAAGAACTGTGGTCAAGTGAGCACAGCTCTCCTTCATCAAGCAGTTTGCTGAATAATGTGATTCTCTGA 2160 45.19 MQSFHQRKNNSLSLQPMTRKNPLLVLSTIVIILVQPISSVHHAHSKCQKSCGPKHGPKYFPYPFGFSTGCKIRLNCTEMGRAQIGEFSVQSISSEKITITVEAKCYRPFQSIHQLFSRKYAPTVRNAILLQNCSSATSPTCVFPVEATTGQTNFETPNCGFSNSSISCYSQKGIDGLMNFENLSTSLQCEYFLSAISVAPLYRSEAVSTLEVQTIELGWWLEGKCQCVSGAKCVELVSPVNGRPAFRCECPEGFLGDGYLAGDGCRKVSVSHCYPVKYIYGECGGRTRVLVLIGGVFGGAFLMLSLGLICCLVRWQTKLRAQTVTKRRITEATQGSCIIPIYTYKEIEKATNSFSDKQRLGTGAYGTVYAGKLQGDHEWVAIKRIKNRDNDTIEQVMNEIKLISSVTHPNLVRLLGCSIENSQQIVVYEFMPNGTLYQHLQRERGEGLSWPIRVTIATETARAIAHLHSAIKPPIFHRDIKSSNILLDYSFKSKVADFGLSRLGLTETSHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLAEMLTGLKVVDFSRPKYEVNLAALATDRIGNGCLDEIIDPILYPHEDAWTLLSMHKVAEIAFRCLAFHRDMRPSMMEVAAELEELRLSRWTHSISGVKNYDSELGVPGLSTCCSSLSDSSGKVLSCRVDKEVDGDGFFHSMDKMKDNSPVSVQELWSSEHSSPSSSSLLNNVIL 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9314587 9317273 + Conep17aG0134400.1 Cone17ag1312 456789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1312 719 Pfam Protein kinase domain 355 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1312 719 SMART serkin_6 354 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1312 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1312 719 Gene3D Phosphorylase Kinase; domain 1 340 430 - -
Cone17ag1312 719 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524(InterPro)
Cone17ag1312 719 Gene3D Transferase(Phosphotransferase) domain 1 431 645 - -
Cone17ag1312 719 ProSiteProfiles Protein kinase domain profile. 354 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1312 719 SUPERFAMILY Protein kinase-like (PK-like) 334 627 IPR011009 -
Cone17ag1312 719 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 41 706 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone17ag1312 719 FunFam Wall-associated receptor kinase-like 14 320 430 - -
Cone17ag1312 719 FunFam Wall-associated receptor kinase-like 20 431 639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1312 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1312 Cone-Chr17:9314587 Cone9ag1279 Cone-Chr9:9578313 1.82E-235 dispersed
Cone17ag1312 Cone-Chr17:9314587 Cone20ag0161 Cone-Chr20:701412 1.53E-112 wgd
Cone17ag1312 Cone-Chr17:9314587 Cone4ag1440 Cone-Chr4:11435233 1.11E-71 wgd
Cone17ag1312 Cone-Chr17:9314587 Cone4ag1879 Cone-Chr4:13434443 6.99E-226 wgd
Cone17ag1312 Cone-Chr17:9314587 Cone6ag1365 Cone-Chr6:10938260 1.97E-236 wgd
Cone17ag1312 Cone-Chr17:9314587 Cone7ag1788 Cone-Chr7:11731708 5.95E-265 wgd
Cone17ag1312 Cone-Chr17:9314587 Cone7ag1495 Cone-Chr7:10463230 1.22E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82286 PF00173 Cyt-b5 5.20E-16 No_clan Cone PK