Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1315 ATGGGAGTACTAGAAACGCCGCTGCTAAACAACCATAGTAGCAACCTCAGCAGCAACGGCGACGGTGATGGTCAAAAGCCAACAACCGCCTTCCAAGAGTTTAAGTCCGAGTCAAAGAGATTATGGAAGCTCGCTGGCCCTGCTATCTTCACTTCCATTACTCAGTACTCACTCGGTGCACTCACTCAGACATTTGCCGGTCAACTCAGCGAGATCGATCTCGCAGCCGTCTCCGTCGAAAACTCCGTCGTTGCCGGTCTAGCTTTTGGAGTCATGTTGGGAATGGGAAGTGCTTTGGAGACGCTTTGTGGGCAAGCATATGGTGCGGGCGGGATCAGGATGTTAGGTATCTACATGCAAAGATCATGGGTCATTTTGTTGACCACGGCTTGTTTTCTGGTCCCTATCTATATCTGGTCTCCTCCTATTCTTGAGTTAATCGGAGAAACCACTGAAATCTCGGAAGCTGCTGGGAAATTTGCAATATGGATGATTCCACAGTTATTTGCATATGCTATGAATTTTCCTATACAGAAATTCTTACAGTCACAAAGGAAAGTCATTGTCATGGCATGGGTATCTGCCATTGTGTTGGTGCTACATACATTTTTTAGCTGGCTACTTATGTTGAAGCTTGGCTGGGGTCTGACCGGAGCTGCCATCGTTCTAAACACGTCATGGTGGCTCATCGTGATTGGCCAATTGCTCTACATCTTCATAACGAAGTCAGATGGGGCTTGGAGTGGATTCTCTTGGCTGGCTTTTGCTGATTTGTATGGCTTTGTTAAGCTCTCTTTGGCTTCTGCTGTCATGTTATGCTTGGAGTTTTGGTACTTGATGATTCTGGTGGTGATAACAGGCCGTTTGACAGACCCTTTGATACCCGTCGATGCTATCTCGATCTGCATGAACATTCAAGGATGGGATGCCATGATTGCGCTAGGATTCAACGCGGCAATAAGTGTGAGGGTGTCAAATGAACTCGGAGGCGGAAAGGCTCAAGCGGCTAAGTTCGCCGTGGTGGTTGTTTCGGTCACTTCCATGGCCATAGGAGTCGTTTGCATGTGTGTAGTATTTGCAACAAGAGACTACTTCCCTTACCTATTCACCTCAAGTGATGCAGTCGCTGAGGAAACTACTAAACTTGCTTGGTTGCTAGGAATTACAGTGCTTCTTAACAGCCTTCAACCAGTCTTATCCGGTGTGGCTGTTGGTGCTGGATGGCAAGCTATTGTCGCATATATAAACATTGGCTGTTACTACATAGTCGGATTGCCTGCGGGGATACTCCTCGGCTTCACGTTTGATTTTGGAGTTGAGGGTATCTGGTCAGGGATGATTGGAGGGATTTGTTTGCAAACTATAATACTGATAGTGATTACCTCCATTACTAACTGGAACAGAGAAGCAGAGGAAGCTGGAAGCAGAGTAAAGAGATGGGGAGGAGGTTCTGCAGAGGATTGA 1464 46.93 MGVLETPLLNNHSSNLSSNGDGDGQKPTTAFQEFKSESKRLWKLAGPAIFTSITQYSLGALTQTFAGQLSEIDLAAVSVENSVVAGLAFGVMLGMGSALETLCGQAYGAGGIRMLGIYMQRSWVILLTTACFLVPIYIWSPPILELIGETTEISEAAGKFAIWMIPQLFAYAMNFPIQKFLQSQRKVIVMAWVSAIVLVLHTFFSWLLMLKLGWGLTGAAIVLNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFADLYGFVKLSLASAVMLCLEFWYLMILVVITGRLTDPLIPVDAISICMNIQGWDAMIALGFNAAISVRVSNELGGGKAQAAKFAVVVVSVTSMAIGVVCMCVVFATRDYFPYLFTSSDAVAEETTKLAWLLGITVLLNSLQPVLSGVAVGAGWQAIVAYINIGCYYIVGLPAGILLGFTFDFGVEGIWSGMIGGICLQTIILIVITSITNWNREAEEAGSRVKRWGGGSAED 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9323225 9325890 - Conep17aG0134700.1 Cone17ag1315 456792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1315 487 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 471 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone17ag1315 487 MobiDBLite consensus disorder prediction 1 29 - -
Cone17ag1315 487 MobiDBLite consensus disorder prediction 7 29 - -
Cone17ag1315 487 Pfam MatE 47 207 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone17ag1315 487 Pfam MatE 268 428 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone17ag1315 487 CDD MATE_eukaryotic 37 472 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone17ag1315 487 NCBIfam MATE family efflux transporter 47 443 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1315 K03327 - - rcu:8260928 802.357
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1315 Cone-Chr17:9323225 Cone19ag1059 Cone-Chr19:7792757 6.20E-195 dispersed
Cone17ag1315 Cone-Chr17:9323225 Cone7ag1795 Cone-Chr7:11763816 4.44E-299 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g873 Blo01g01550 . Bda01g00549 . Bpe02g00407 . . Bma01g02300 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1795 Cone17ag1315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001944 2 1 2 3 1 1 1 1 1 2 1 1 3 1 1 3 1 5 1 1 1 3 2 6 4 1 2 4 7 1 64