Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1316 ATGGCTGGTAAATACTACATCGATAATGGCCCAATAACATTGCGAATTATGGGTTGGTTTAGCAAATTCCTAAAAGTCGGGTCCAGCCATAAATGTGAGGGGCATTGCCACTCAAGTTACGAGGACGAACGGACTTCTTACTCAGCTTCTAATTCAGAGGATATATTGTCCCAAAACGATGAAGATATAGACCATGCTATTGCCCTCTCTCTCTTAGAAGACAATCAAAAGGGGAAAAATGTTATCGATGACGATTATCGGTTTAAAGAAGATGAACAACTTGCCAGAGCCATGCAAGAAAGCCTCCATGTGGAGTCTCCTCCTTGTTATACTAATGGAAATATGTACCATCCTTTTCCGCTTCATTTTCCGATGGGGCCGAGAGTATGTGCTGGCTGCTATTTTGAGATTGGGTATGGACGATATCTGAACTGTCTCAATGCATTTTGGCATCCAGAATGTTTCCGGTGCTGTGCTTGTAGCCTCCCAATTTCCGATTGTGAGTTTTCTACTTCAGGGAATTATCCATATCATAAATCTTGCTACAGGGAGAACTATCATCCGAAATGTGATGTGTGCAAGCACTTTATTCCAACAAACCATGCCGGTCTTATTGAATATAGGGCACATCCTTTTTGGATACAAAAATACTGCCCTTCTCATGAACATGATGGTACACCTAGGTGTTGCAGCTGCGAACGAATGCAGTCAAGGGACACGAGATATGTGGCGCTTAATGATAGTAGAAATCTCTGCTTGGAGTGTATGGACTCTTCAATCATGGACACGAATGAATGTCAACCTCTATATCTTGAGATTCAAGAGTTTTATAAGAATTTAAATATGAAAATCGAGCAGGATGTTCCGTTGCTTTTGGTCGAAAGACAAGCACTCAATGAAGCTAGAGAAGGAGAAAAGCATGGTCATTATCACATGCCCGAAACAAGAGGACTCTGTCTCTCAGAAGAACAAACAATCAGCACTGTCTCAAGACGACCTAAGGTTGGATCAGGAAAGAGAGGCACAAATACGATGCATGAGCCCTGTAAACTAACACGTCGTTGTGAGGTTACAGCAATTCTTATCCTGTACGGCCTTCCAAGGTGGCTTACTGGATCAATTCTCGCCCATGAAATGATGCATGCATGGCTACGACTAAAAGAGCTTATGTCAGGATCAGAAAGCATTAGCAATATGGCATCAACCTCCTCCCTGTCAGCTTCAAGAAAAGGGGCAAGAACTCAATTCGAGAAGAAACTTGGGGAGTTCTTTAAGCACCAGATTGAATCAGACATGTCCCCTGTTTATGGAGACGGGTTTAGAGCTGGTCAGATTGCGGTTCATAAATACGGTCTTAGGACTACCCTCGACCATATGCGGAGGACGGGCTGTTTCCCAGATTGA 1404 43.16 MAGKYYIDNGPITLRIMGWFSKFLKVGSSHKCEGHCHSSYEDERTSYSASNSEDILSQNDEDIDHAIALSLLEDNQKGKNVIDDDYRFKEDEQLARAMQESLHVESPPCYTNGNMYHPFPLHFPMGPRVCAGCYFEIGYGRYLNCLNAFWHPECFRCCACSLPISDCEFSTSGNYPYHKSCYRENYHPKCDVCKHFIPTNHAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMQSRDTRYVALNDSRNLCLECMDSSIMDTNECQPLYLEIQEFYKNLNMKIEQDVPLLLVERQALNEAREGEKHGHYHMPETRGLCLSEEQTISTVSRRPKVGSGKRGTNTMHEPCKLTRRCEVTAILILYGLPRWLTGSILAHEMMHAWLRLKELMSGSESISNMASTSSLSASRKGARTQFEKKLGEFFKHQIESDMSPVYGDGFRAGQIAVHKYGLRTTLDHMRRTGCFPD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9329308 9332589 + Conep17aG0134800.1 Cone17ag1316 456793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1316 467 Pfam LIM domain 130 185 IPR001781 -
Cone17ag1316 467 SMART uim 58 77 IPR003903 -
Cone17ag1316 467 SMART uim 89 108 IPR003903 -
Cone17ag1316 467 CDD LIM_DA1 130 182 - -
Cone17ag1316 467 ProSitePatterns LIM zinc-binding domain signature. 130 164 IPR001781 -
Cone17ag1316 467 SMART lim_4 129 181 IPR001781 -
Cone17ag1316 467 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 89 108 IPR003903 -
Cone17ag1316 467 Pfam Protein DA1 280 388 IPR022087 -
Cone17ag1316 467 Pfam Protein DA1 395 462 IPR022087 -
Cone17ag1316 467 PANTHER PROTEIN DA1-RELATED 2 389 466 IPR045218 GO:0043130(PANTHER)
Cone17ag1316 467 Gene3D Cysteine Rich Protein 126 188 - -
Cone17ag1316 467 ProSiteProfiles LIM domain profile. 128 188 IPR001781 -
Cone17ag1316 467 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1316 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1316 Cone-Chr17:9329308 Cone1ag1251 Cone-Chr1:56105165 7.29E-168 dispersed
Cone17ag1316 Cone-Chr17:9329308 Cone20ag0158 Cone-Chr20:690007 0 wgd
Cone17ag1316 Cone-Chr17:9329308 Cone4ag1886 Cone-Chr4:13470594 1.35E-224 wgd
Cone17ag1316 Cone-Chr17:9329308 Cone7ag1797 Cone-Chr7:11772289 1.16E-238 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45113 PF02854 MIF4G 3.40E-57 CL0020 Cone TR