Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1319 ATGTCAAGTGGAATTGAGGACTCAGCAAGCAATCCGCCTCTAAACTCTTCTGCTAACTTTGAGTGTAATATCTGCTTCGAGTTAGCTCAAGAGCCTATCGTAACCTTATGCGGCCATCTTTTCTGCTGGCCTTGCCTTTACAAGTGGCTCCACTTTCACACCCAATCTCATCAATGCCCGATTTGCAAAGCTGTGGTTGAAGAAGACAAGTTGGTCCCGCTATACGGTAGGGGAAAAACATCAACCGACCCTAGGTTGAAATCAGTTACTTATCCAGGCATCCATATTCCCAACCGTCCAGCCGGGCAGAGACCTGAGACAGCTCCTCGTCCTCCACCCGAGTCAAGTATCTTTCCTCGGCATGAGTTTGGCTTCAATCAAGGTTTGGGTGCGTTTGTCCCCTCTTTATTTGGCCCCCGGGTTCATGGATATGCTAGTCTTTACGGTCCGGCCGGTGGATTTCGTTATGGGTTTCCTCATTCGTTTCATGGCGGTCATGTTCATGGACACTATGGACATGGTCAACGTCATGGACGACAGGATTACCATCTGAAGATACTACTCGTTTTTCTTGGGTTTTGTGTGCTTCTTCTTCTTCTTTCGCAGTAG 609 48.11 MSSGIEDSASNPPLNSSANFECNICFELAQEPIVTLCGHLFCWPCLYKWLHFHTQSHQCPICKAVVEEDKLVPLYGRGKTSTDPRLKSVTYPGIHIPNRPAGQRPETAPRPPPESSIFPRHEFGFNQGLGAFVPSLFGPRVHGYASLYGPAGGFRYGFPHSFHGGHVHGHYGHGQRHGRQDYHLKILLVFLGFCVLLLLLSQ 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9339349 9341033 - Conep17aG0135100.1 Cone17ag1319 456796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1319 202 SMART ring_2 22 62 IPR001841 -
Cone17ag1319 202 CDD RING-HC_AtRMA-like 20 64 - -
Cone17ag1319 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 128 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone17ag1319 202 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Cone17ag1319 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 76 IPR013083 -
Cone17ag1319 202 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Cone17ag1319 202 Pfam RING-type zinc-finger 22 60 IPR027370 -
Cone17ag1319 202 MobiDBLite consensus disorder prediction 92 113 - -
Cone17ag1319 202 SUPERFAMILY RING/U-box 19 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1456 Cone-Chr12:10470220 Cone17ag1319 Cone-Chr17:9339349 1.11E-27 dispersed
Cone17ag1319 Cone-Chr17:9339349 Cone8ag0084 Cone-Chr8:438507 4.85E-63 dispersed
Cone17ag1319 Cone-Chr17:9339349 Cone20ag0156 Cone-Chr20:683521 3.03E-114 wgd
Cone17ag1319 Cone-Chr17:9339349 Cone4ag1888 Cone-Chr4:13476940 3.64E-77 wgd
Cone17ag1319 Cone-Chr17:9339349 Cone7ag1799 Cone-Chr7:11780316 1.23E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1319 K10666 - rcu:8260936 224.557