Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1330 ATGCCATCGGCTAATTTTTCGAGATTAAGAACTGCAGTTTCTAGATCAATTCTAGGGCAGGAAGGTGGGGTCCTAGACTCGGTAGAATTACTAATTCAGCAGAAGACGTTGTTGCTTGGAGCGGTCCGTTCATTTCACTCTTTACCTTTTAAATCACTATTGGAGCTGCACTCATTGTTAAGACAAAGTTCGGTTCTTGCCGGAAGATCAGAGCCGGTGAGCCAGAGAAGGAACATATCTGCTATTGGAGCTGTTTCTCGAACATTTTCTATCCCTTCTGTATCTGGGCCAGTGCTTCAGAATTGTGGGTATCATATTGATTCTGCCCTAGCTGAAACTATTCAATCTTCAATCAGCGTCAAGATTCAGAATAGACCCATGGCTTCTTGTGATTCCAGAGCCCTATTTAGTGATTGTTGTATTGATAATCTAAGCTCTAGGCGTGAACACCTGTCATTTTCTGCCAACAATGCAAGTACAAGTTACGGAAACAGAAGCCTTGACAGTTGCAGAAAAGCTAGCATGAGTTCGAAAGACCGAGAACAACCTAGCAATTCTACTGTTTATGGATACCTCGCATATAATGTTGGCAAAAGGTGGTGCAATTTTAACCCTTACGCAGGGTCAGCTGGCAGAGATATTCATAGCTCATCCGCTACATCTTTTTATTCTGGGCCTGCCTCCATTGTGTATTTTGACAATCCTTCTCGTGAAGAAAAGCCTTTCACCTCTTCAGATTCTGAACAAAAGGTACCAGCTGCCAAAGTCTTGAAACTACTTTCGGGATCTTGCTACCTGCCTCATCCTGATAAAGAAGAGACGGGTGGGGAAGATGCTCATTTTATCTGTACAGATGAAGAAGCTATAGGAGTGGCAGATGGTGTAGGTGGATGGGCAGATCTTGGTGTTGATGCTGGATTATACTCTCGTGAACTTATGCGTCACTCTGTAGATGCAATTCAAGAGGAGCCCAAGGGCTCAATTGATCCTGCAAGGGTCTTGGAGAAGGCTCACTCTAGCACTAAAGCTAAAGGTTCTTCAACTGCTTGTATTATAGCCCTAACAGACCAGGGTCTTCATGCCATTAATTTAGGGGACAGTGGATTTATCGTGGTTAGAGATGGGTGTACCGTTTTCCGATCTCCTGTTCAGCAGCATGATTTTAACTTCACGTATCAACTGGAGTGTGGAAATGACGGTGATTTACCCAGCTCCGGACAGGTTTTCTCTATTCCTGTTGCAAAGGGAGATGTGATAATTGCTGGCACGGATGGGCTTTTCGACAACCTGTACAATAACGAGATAACTGCAGTGGTGGTTCATGCTATGAGAGCCGGTTTGGGCCCGCAAGTAACGGCTCAGAAAATTGCAGCTTTGGCTCGCCAACGAGCTCAGGATAAGGACAGGCAGACCCCTTTTTCCACAGCCGCCCAGGATGCTGGGTTCCGCTATTATGGCGGCAAACTTGATGACATAACCGTTGTCGTTTCCTATGTGACAGGCGGTGCTACTGCTTGA 1518 45.39 MPSANFSRLRTAVSRSILGQEGGVLDSVELLIQQKTLLLGAVRSFHSLPFKSLLELHSLLRQSSVLAGRSEPVSQRRNISAIGAVSRTFSIPSVSGPVLQNCGYHIDSALAETIQSSISVKIQNRPMASCDSRALFSDCCIDNLSSRREHLSFSANNASTSYGNRSLDSCRKASMSSKDREQPSNSTVYGYLAYNVGKRWCNFNPYAGSAGRDIHSSSATSFYSGPASIVYFDNPSREEKPFTSSDSEQKVPAAKVLKLLSGSCYLPHPDKEETGGEDAHFICTDEEAIGVADGVGGWADLGVDAGLYSRELMRHSVDAIQEEPKGSIDPARVLEKAHSSTKAKGSSTACIIALTDQGLHAINLGDSGFIVVRDGCTVFRSPVQQHDFNFTYQLECGNDGDLPSSGQVFSIPVAKGDVIIAGTDGLFDNLYNNEITAVVVHAMRAGLGPQVTAQKIAALARQRAQDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVTGGATA 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9375941 9378587 - Conep17aG0136200.1 Cone17ag1330 456807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1330 505 Gene3D - 402 502 IPR036457 -
Cone17ag1330 505 PANTHER PROTEIN PHOSPHATASE 2C 183 500 IPR039123 GO:0004722(PANTHER)|GO:0006470(PANTHER)|GO:0009507(PANTHER)
Cone17ag1330 505 Pfam Protein phosphatase 2C 312 442 - -
Cone17ag1330 505 SUPERFAMILY PP2C-like 264 497 IPR036457 -
Cone17ag1330 505 SMART PP2C_4 250 497 IPR001932 -
Cone17ag1330 505 ProSiteProfiles PPM-type phosphatase domain profile. 260 499 IPR001932 -
Cone17ag1330 505 SMART PP2C_SIG_2 259 499 IPR001932 -
Cone17ag1330 505 Gene3D - 270 396 IPR036457 -
Cone17ag1330 505 FunFam 5-azacytidine resistance protein azr1 268 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1330 K17508 - - csv:101205693 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0755 Cone-Chr12:6975213 Cone17ag1330 Cone-Chr17:9375941 3.29E-136 dispersed
Cone17ag1330 Cone-Chr17:9375941 Cone20ag0148 Cone-Chr20:657669 0 wgd
Cone17ag1330 Cone-Chr17:9375941 Cone6ag1609 Cone-Chr6:12454559 7.15E-69 wgd
Cone17ag1330 Cone-Chr17:9375941 Cone8ag0798 Cone-Chr8:8019780 1.16E-126 wgd
Cone17ag1330 Cone-Chr17:9375941 Cone9ag1536 Cone-Chr9:11179332 9.97E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83