Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1336 ATGCTTCGTCGCTGGACTAATTCGCAGCACCATGATCACCCCATTGACGATGGGCACAGAGCATCGAAGGTGGATGAGCTTAAGGCTGCGATAGGACCTCTATCTGGATCAAGTTTACAATATTGCTCAGATTCATGCTTGAGGAGATACCTTGAAGCTCGGAACTGGAATGTCGACAAATCAAAGAAAATGCTCGAGGAATCACTCAAATGGAGATCCATCTTTAAGCCTGAACAGATCCGCTGGCATCAAGTAGCTATGGAAGGAGAAACCGGAAAGGTTTCGAGGGCCAACTTTCATGACCGACAGGGCCGGACCGTCCTCATACTCAGACCGGCCCTACAGAATACAACATCATTGGATAATCAGATGAGGCATTTAGTGTACTTAATAGAGAACGCCATACTTAACCTTCCAGAGGATCAAGAACAGATGTCATGGCTTATAGACTTTACTGGCTGGTCGTTAAGCACCAGCGTGCCCGTCAAATCTGCTAGAGAGACTGTCAATATCCTGCAAAATCACTACCCCGAACGGCTTGCCGTTGCATTTCTTTACAATCCTCCCCGAATTTTCGAAGCCTTCTGGAAGATTGTGAAGTATTTTCTGGATGCCAAGACATTTCAGAAGGTGAAGTTTGCGTATCCTGGGAATGGAGAGAGTGTGGAGCTGATGAGGTCTTATTTTGATGAGGAAAACCTTCCAACTGAATTTGGAGGGAAAGCTGTATTGAAGTATGACCACGAGGAGTTCTCGACATTAATGGAACAGGATGATGTTAAATCTGCTGCCTTTTGGGACCTGCCCGAAAAGAAGCATCAACTGTTAAGCAATGGCCATTCTGGAGCCGAGGTTGCCCCAGAGCCATCCATGCTAGACTAG 882 46.49 MLRRWTNSQHHDHPIDDGHRASKVDELKAAIGPLSGSSLQYCSDSCLRRYLEARNWNVDKSKKMLEESLKWRSIFKPEQIRWHQVAMEGETGKVSRANFHDRQGRTVLILRPALQNTTSLDNQMRHLVYLIENAILNLPEDQEQMSWLIDFTGWSLSTSVPVKSARETVNILQNHYPERLAVAFLYNPPRIFEAFWKIVKYFLDAKTFQKVKFAYPGNGESVELMRSYFDEENLPTEFGGKAVLKYDHEEFSTLMEQDDVKSAAFWDLPEKKHQLLSNGHSGAEVAPEPSMLD 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9392753 9393912 + Conep17aG0136900.1 Cone17ag1336 456813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1336 293 MobiDBLite consensus disorder prediction 1 21 - -
Cone17ag1336 293 Pfam CRAL/TRIO, N-terminal domain 40 67 IPR011074 -
Cone17ag1336 293 CDD SEC14 100 241 IPR001251 -
Cone17ag1336 293 FunFam Phosphatidylinositol transfer protein 3 3 275 - -
Cone17ag1336 293 SUPERFAMILY CRAL/TRIO N-terminal domain 17 83 IPR036273 -
Cone17ag1336 293 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
Cone17ag1336 293 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
Cone17ag1336 293 Gene3D - 6 273 IPR036865 -
Cone17ag1336 293 PANTHER GH16843P 16 273 IPR052578 GO:0008526(PANTHER)
Cone17ag1336 293 Pfam CRAL/TRIO domain 93 240 IPR001251 -
Cone17ag1336 293 SMART sec14_4 88 243 IPR001251 -
Cone17ag1336 293 SUPERFAMILY CRAL/TRIO domain 85 256 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1336 K26544 - - cit:102631036 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1336 Cone-Chr17:9392753 Cone7ag1579 Cone-Chr7:10819370 2.57E-88 dispersed
Cone17ag1336 Cone-Chr17:9392753 Cone8ag0807 Cone-Chr8:8126927 5.63E-145 wgd
Cone17ag1336 Cone-Chr17:9392753 Cone9ag1544 Cone-Chr9:11220343 1.21E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g936 . . . . . . . . . . Cma01g01905 . Car01g01486 . . . . . . . . . . . . . . . . . . . . Cone17ag1336 . Lsi04g01657 Csa03g04202 Chy04g00516 . . . . . . . . . . Cmo01g01968 . . . . . . Cpe02g00131 . . . . . . . Cla05g01946 Cam05g2089 Cec05g2102 Cco05g2156 Clacu05g2084 Cmu05g1960 Cre05g2079 . . . Cme04g00574
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82