Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1338 ATGTCCTTCTCTTCATACCCTGCAAGACTCGCTCTCCTCGCTCTCCTCTCCGCCTCCACCTTCTACTGCTTCTACAAATCTCGCCGCCTCAAAAGCCTCAAGCTCTCTCTTGCATCTAAATGTAGCCCTCATCCTACTCCTTCTTCTCCAAGAGCCAAGCTCTTCTTCATCTCCCAAACAGGCACATCCAAAGCCCTAGCTAATCGTCTGCTTAACCTTTTAGCCTCAAACAGTCTCGAATTTGATATTATTGATCCAAAAGACTACGAGCCAGAAGACCTTCCGAAAGAAGCGCTTGTCTTGTTCATTGCATCGACTTGGGAAGATGGAAAGCCACCTCCACATGCTAAATTCTTCGCCAATTGGCTCGACGAAAGCGCTCAAGATTTCAGAGTGGGATCTTTGTTGCTCTCTCAGTGTCGTTTTGCAGTCTTTGGAGTCGGAAGCCGAGCCTATGGACCTTCGTTCAACTCCGTCGCGCACGTTTTCTCAAAGCTTATGAAAGCATTGGGCGGGAGCGAGATTTTGTCCGTAGGGGAAGGGGATGTTGATGCAGGTGATATAGATGAAGTTTTTGACGTGTGGAGTAGGAAACTTGTTAAGGTGTTGAAAGGTGGAGCAGTTGAAAACGGTGAGAATTTTTTGAGTCCTCAGATTGCAGAAGAGAGTGATGCTGAGGAGTATGAGGATTCTGACGATGAGGTGGAGTCAGAAGTAGTTGATCTTGAGGACATTGCTGGCAAAGCTCCTTCCAGGAAATCCTTGCAAGTAGCTGAAACTAATGGCAAATTGAACGGCAAAAAGGAGATGGTAACTCCAGTTATCAGGGCAAGCCTAACAAAGCAGGGATATAAGATTATTGGTACACATAGTGGTGTCAAAATATGTAGATGGACAAAGTCCCAGCTAAGAGGAAGAGGAGGTTGCTATAAGCACTCGTTTTATGGCATAGAGAGCCACAGGTGCATGGAGGCAACTCCTAGTTTGGCGTGTGCCAACAAATGCGTTTTCTGTTGGAGGCATCACACAAATCCTGTCGGAAAGAGTTGGCAGTGGGAGATGGACAACCCTTTGGAGATTGTGGATTCTGCTATTAAACAACACACAAATATGATTAAACAAATGAAAGGAGTTCCTGGTGTCACAAAGGAACGATTGACAGAAGGCCTTTCTCCAAGGCATTGTGCTTTATCACTTGTCGGTGAACCTATAATGTATCCAGAGATTAATACACTCATCGATGAACTACATCGTAGGAGGATATCTACATTCTTAGTGACAAATGCCCAGTTTCCTGAGAAGATAAAGTCATTGAATCCCATTACACAGTTATATGTAAGTGTAGATGCTGCAACCAAAGAGAGCTTAAAGGCTATTGATAGGCCACTGTTTGGGGACTTTTGGGAACGATTCATAGATTCCTTAAAATCCCTCAGGGACAAAAACCAGCGAACCGTTTACCGACTTACATTGGTGAAAGGGTGGAACACGGAAGAAATAGATAGTTACTTCAATCTCTTTAGTATTGGCAGTCCTGATTTTATCGAAATAAAAGGCGTCACCTATTGTGGATCGTCTACTACATCAAAGTTGACCATGGAAAATGTTCCATGGCATTCTGATGTGAAATCTTTTTCTGAGGCATTAGCTCTAAGAAGCCAAGGGGAGTACGAAGTTGCATGTGAGCATGCACACTCATGCTGTGTCCTTTTGGCCAAGACTGAGAAATTTAAGGCCAATGGTCAATGGTTTACCTGGATTGACTACGACAAGTTCCATGACCTGGTGGCTTCTGGAAAACCTTTTGACAGCAAGGATTACATGGCTCCCACTCCGTCGTGGGCCGTATATGGAGCAGAGGAAGGTGGGTTTGATCCAGATCAGTCTCGTTATCGGAAGGAGCGACATCACAAATCAAGTCAATGA 1926 44.76 MSFSSYPARLALLALLSASTFYCFYKSRRLKSLKLSLASKCSPHPTPSSPRAKLFFISQTGTSKALANRLLNLLASNSLEFDIIDPKDYEPEDLPKEALVLFIASTWEDGKPPPHAKFFANWLDESAQDFRVGSLLLSQCRFAVFGVGSRAYGPSFNSVAHVFSKLMKALGGSEILSVGEGDVDAGDIDEVFDVWSRKLVKVLKGGAVENGENFLSPQIAEESDAEEYEDSDDEVESEVVDLEDIAGKAPSRKSLQVAETNGKLNGKKEMVTPVIRASLTKQGYKIIGTHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDNPLEIVDSAIKQHTNMIKQMKGVPGVTKERLTEGLSPRHCALSLVGEPIMYPEINTLIDELHRRRISTFLVTNAQFPEKIKSLNPITQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKSLRDKNQRTVYRLTLVKGWNTEEIDSYFNLFSIGSPDFIEIKGVTYCGSSTTSKLTMENVPWHSDVKSFSEALALRSQGEYEVACEHAHSCCVLLAKTEKFKANGQWFTWIDYDKFHDLVASGKPFDSKDYMAPTPSWAVYGAEEGGFDPDQSRYRKERHHKSSQ 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9397404 9400761 - Conep17aG0137100.1 Cone17ag1338 456815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1338 641 MobiDBLite consensus disorder prediction 619 641 - -
Cone17ag1338 641 Pfam Flavodoxin 54 195 IPR008254 GO:0010181(InterPro)
Cone17ag1338 641 SFLD tRNA wybutosine-synthesizing 266 578 IPR034556 GO:0008033(InterPro)|GO:0051539(InterPro)
Cone17ag1338 641 SFLD tRNA wybutosine-synthesizing 266 578 - -
Cone17ag1338 641 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 258 587 - -
Cone17ag1338 641 SUPERFAMILY Radical SAM enzymes 328 507 - -
Cone17ag1338 641 Gene3D Aldolase class I 254 586 IPR013785 -
Cone17ag1338 641 Pfam Radical SAM superfamily 329 505 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone17ag1338 641 CDD Radical_SAM 327 526 - -
Cone17ag1338 641 ProSiteProfiles Radical SAM core domain profile. 315 558 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Cone17ag1338 641 Coils Coil 225 245 - -
Cone17ag1338 641 PRINTS Flavodoxin signature 101 112 IPR001094 GO:0010181(InterPro)
Cone17ag1338 641 PRINTS Flavodoxin signature 53 66 IPR001094 GO:0010181(InterPro)
Cone17ag1338 641 PRINTS Flavodoxin signature 139 149 IPR001094 GO:0010181(InterPro)
Cone17ag1338 641 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181(InterPro)
Cone17ag1338 641 ProSiteProfiles Flavodoxin-like domain profile. 52 200 IPR008254 GO:0010181(InterPro)
Cone17ag1338 641 Pfam Wyosine base formation 510 573 IPR013917 -
Cone17ag1338 641 SUPERFAMILY Flavoproteins 51 203 IPR029039 -
Cone17ag1338 641 Gene3D - 25 214 IPR029039 -
Cone17ag1338 641 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 7 639 IPR034556 GO:0008033(InterPro)|GO:0031591(PANTHER)|GO:0051539(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1338 K15449 - - csv:101217239 1023.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34