Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1343 ATGGCCTCTAGCTCGAGTAGTAATTGGACATCGAAGCAACACAAGCTGTTTGAGAATGCTCTTGCAGTCTACGACAAGGACTCTCCCGATCGTTGGCAGAATCTGGCTAGAGCCGTTGGCGGTAAAACGACAGTGGAAGATGTCAAACGACACTTCGACATGCTCGTTGAAGATGTCGACAAGATCGAGTCCGGTCAAATCCCCTTGCCCAATTACAGAAAATCTGCTAAAGGCTACTCCACTGCTAATTTCATCGACGAAGAAAGGTAA 270 47.41 MASSSSSNWTSKQHKLFENALAVYDKDSPDRWQNLARAVGGKTTVEDVKRHFDMLVEDVDKIESGQIPLPNYRKSAKGYSTANFIDEER 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9421300 9421569 + Conep17aG0137600.1 Cone17ag1343 456820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1343 89 CDD SANT 8 56 IPR001005 -
Cone17ag1343 89 Gene3D - 1 69 - -
Cone17ag1343 89 FunFam Transcription factor SRM1 1 69 - -
Cone17ag1343 89 SUPERFAMILY Homeodomain-like 8 63 IPR009057 -
Cone17ag1343 89 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 78 IPR044636 GO:0003700(InterPro)
Cone17ag1343 89 SMART sant 5 58 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1343 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0964 Cone-Chr12:8351125 Cone17ag1343 Cone-Chr17:9421300 2.28E-25 dispersed
Cone17ag1343 Cone-Chr17:9421300 Cone20ag0138 Cone-Chr20:624593 6.37E-54 dispersed
Cone17ag1343 Cone-Chr17:9421300 Cone17ag1348 Cone-Chr17:9443033 3.35E-24 proximal
Cone17ag1343 Cone-Chr17:9421300 Cone4ag1912 Cone-Chr4:13590212 8.73E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g948 Blo01g01563 . Bda01g00528 . Bpe02g00390 . . Bma01g02321 . . Cma01g01911 Cma09g00157 Car01g01492 . Sed05g2314 Cpe06g00112 . Bhi04g00244 Tan02g0788 Cmetu01g0968 . Hepe02g0493 . Lcy13g1988 . . . . . . . Cone4ag1912 . Cone17ag1343 Cone20ag0138 Lsi04g01666 Csa03g04211 Chy04g00508 . Blo17g00801 Blo18g00814 Bda08g01283 Bda01g01494 Bpe02g01690 Bpe05g00091 Bma01g00763 . . Cmo01g01973 Cmo09g00156 . . . Car09g00139 . Cpe02g00126 . . . . . . . Cla05g01939 Cam05g2083 Cec05g2096 Cco05g2147 Clacu05g2079 Cmu05g1953 Cre05g2074 . . . Cme04g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001876 2 2 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 3 2 1 68