Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1349 ATGGGCAGTGATGATGCTAGTAGCATAATGGAACCTCAGCATGATTGTAATGTTAAGGTTCATCGCTTATTGTGCTTAGAGCTTAAGAAATTTGTTGATAGAATCTCTCAGAGCATTTCGGCCATTGAGTCAGCTCGACCGAGTACAACAGGAATGCAGGCATTGTGTTTATTGCATGTGACGATAGATAAAGCCAAGCTTCTTATTCACCACTGCTCAGATTCTAGTAAACTTTACTTGGCACTCAAAGCAGATAAGATCCTCTTGAGATGTCAGAGGATATGCGGCAATATGGAATTACGTTTGAGTCAAGTTCAGGAAGAGGTTCCATCTTTGTTGTCTGGACAGATATCTGAAATCATTAGTGATCTTAGGACTTCAAGGTTTATTTTGGATCCTTCTGAAGACGAGGCAGGGAAGGTTGTATTAGCACTGCTTTTGAAGGATATACCTGCATCCTCCTCAATGAATAGTCTAGAGCTCCAGCCTCTTCAGTTTGCTGCCTCCAAGCTAAACTTGGCATCCCGTCTGGCTATCTTAATAGAGAGAAGGTCCATAAAGAAGTTTCTGAATAACGCTCGTAATATGAACCATAAAAGCCTGAAAATCTTGAATTACTTCCTATACCTTGTGATTAAGTATGGCAGTATAATCGGAGATCATCAAATTGAGAGTACTAACTCACACTTCTATCGTCAGTTTATTGAGCTACAAGCAACTGAAGACTACACCAACATACTTCGAGAAAATAATGATGGTTCCCCTGAACCCCCACAAGAATTTAAATGCCCCATCTCGAAGAGATTGATGTATGATCCTGTAATTATCGCTTCTGGAAGAACCTTTGAAAAAAAATGGATACAGAAATGGATAGCAGAGGGTAATGAGACTTGTCCAGCAACTGGTCTGAAGTTAGAGAATTTGTCTTTGACTCCAAATCCTGCGATGAAAGGACTCATTTCAAAATGGTGTTTGATGCATGGGGTCACAGTTCCTGACCATTCGGTTCCTTCTGTTCTTTCCACACTCTACAATTCATCTTCTACCTCTATTGCAAGCTTTGACAGTTACATGAATAATTTAAACCTTCAAACAAGCAATATCTCACTGCGCTCTTCCGATACGACATTTGATACAGATTTGCTATCTGACAAGAATGCCAGTGGATGTCAGCTTGAACTTCTTCAGATAAATTCAGATACTCTCCGTTCTGAATTTTCTTGGGAAGCCCAGTGCAAAGCAGTGGATGACATACTAAAACAACTGGATGAGAACGAAGAAGCGTGGGATTTGACAGTTTCAACTCATTATGTCAAGCTATTGATTAAGTTTCTGAAGAATGCACTTCAATTAGGGGATGTTAAAGCACAAAGAGACGGAGCCAATGCACTTTTGACTATTTTAAGTAAAAGAAGTGAAAAAGTATCCTTTCTTGAAGATGAACTTTTTGTGTTGGCATCACTTCTGGATTCTGAAATAGTCAAAGAAGCCCTTTCAATCATGGAAACTCTGTCGTGCCAGCAGTCTTATAAATCAAAAATCGTGTCTTGTGGTATTCTTCCTTCCATTTTCAAAGTACTCGACACCAAAAACGTGGACTACTGCACTCTTGCTATGAAAATATTGTGTAACCTGTCCAGCAATAGCGAAACAGGTTGCCATATTGTGTATCTGGACTGCATTAACAAGCTGGTCAAATATTTGGGCGATCCTATTCTTGGAAGATACTGCATCAACATAATTAAAAATCTCTGCAGTTTTAGGGAGGGTAGAATCGAAGTGGCAGAAACACATAAGTGCATCAAAATCATTGTCGGGTTACTACAAAACGGCACACCTGAGGAACAGGAACATGCTGCAGATGTTGTTCATGCTCTGTGTTATGAGCAGGTTGAGTATATAGAAGTTGTTGTGACAGAGAATGTCATTCATTCTTTAGTAAATTTGTCGATCTATGGGAGTTGTAGGGGCAAGGTGATTGCAAGTGAATTGCTCCAGCTCATCGGACACGTGACAGATAGCAATCCTTCTGGATACTGTCTCCCTAAAGCTGGCTTGAACCACAACAGCTCAAACAACTTGGTAAACAGCTCTAAAAAGAAAAAGGCCTCTTTGAAAAGATTTGGGTTTCTTGGAAGGAGAATATATAGATTTTCTCAGCCCAGCTGTTAG 2172 40.01 MGSDDASSIMEPQHDCNVKVHRLLCLELKKFVDRISQSISAIESARPSTTGMQALCLLHVTIDKAKLLIHHCSDSSKLYLALKADKILLRCQRICGNMELRLSQVQEEVPSLLSGQISEIISDLRTSRFILDPSEDEAGKVVLALLLKDIPASSSMNSLELQPLQFAASKLNLASRLAILIERRSIKKFLNNARNMNHKSLKILNYFLYLVIKYGSIIGDHQIESTNSHFYRQFIELQATEDYTNILRENNDGSPEPPQEFKCPISKRLMYDPVIIASGRTFEKKWIQKWIAEGNETCPATGLKLENLSLTPNPAMKGLISKWCLMHGVTVPDHSVPSVLSTLYNSSSTSIASFDSYMNNLNLQTSNISLRSSDTTFDTDLLSDKNASGCQLELLQINSDTLRSEFSWEAQCKAVDDILKQLDENEEAWDLTVSTHYVKLLIKFLKNALQLGDVKAQRDGANALLTILSKRSEKVSFLEDELFVLASLLDSEIVKEALSIMETLSCQQSYKSKIVSCGILPSIFKVLDTKNVDYCTLAMKILCNLSSNSETGCHIVYLDCINKLVKYLGDPILGRYCINIIKNLCSFREGRIEVAETHKCIKIIVGLLQNGTPEEQEHAADVVHALCYEQVEYIEVVVTENVIHSLVNLSIYGSCRGKVIASELLQLIGHVTDSNPSGYCLPKAGLNHNSSNNLVNSSKKKKASLKRFGFLGRRIYRFSQPSC 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9445026 9449477 + Conep17aG0138200.1 Cone17ag1349 456826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1349 723 SMART Ubox_2 260 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1349 723 CDD RING-Ubox_PUB 258 310 IPR045210 -
Cone17ag1349 723 PANTHER U BOX DOMAIN-CONTAINING 24 668 - -
Cone17ag1349 723 Gene3D - 392 681 IPR011989 -
Cone17ag1349 723 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1349 723 Pfam U-box domain 258 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1349 723 SUPERFAMILY ARM repeat 402 677 IPR016024 -
Cone17ag1349 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 330 IPR013083 -
Cone17ag1349 723 SUPERFAMILY RING/U-box 247 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1349 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0765 Cone-Chr12:7041172 Cone17ag1349 Cone-Chr17:9445026 1.84E-121 dispersed
Cone17ag1349 Cone-Chr17:9445026 Cone19ag1117 Cone-Chr19:8027342 3.84E-71 dispersed
Cone17ag1349 Cone-Chr17:9445026 Cone6ag1628 Cone-Chr6:12536070 3.07E-151 wgd
Cone17ag1349 Cone-Chr17:9445026 Cone8ag0814 Cone-Chr8:8171749 5.99E-123 wgd
Cone17ag1349 Cone-Chr17:9445026 Cone9ag1553 Cone-Chr9:11266669 2.44E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g956 Blo01g01566 . . . Bpe02g00386 . . Bma01g02326 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017270 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6