Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1352 ATGGAGCAAGATGCCGGAAAGACTGTCTGTGTGACCGGTGCATCCGGTTTCATTGGATCATGGCTCGTCATGAGGCTCCTCGAGCGTGGTTACACTGTTCGAGCCACAGTGCGCGACCCTGGGAATATAAAGAAGGTGAAGCATTTGCTGGACTTGCCAAAGGCTGAGGGTCAACTGACCCTTTGGAAGGCTGACCTCTCTGACGAGGGAAGCTTTGACGAACCAATTCACGGCTGCGTCGGAGTGTTCCACGTGGCCACACCTATGGACTTTGAGTCTAAGGACCCTGAGAATGAAGTAATAAAGCCAACCGTTGATGGAATGATGGACATTATGAAAGCATGTGTGAACGCGAAAACTGTTCGACGGGTTGTCCTCACGTCGTCGGCAGGAGCTGTCGCCTTTGGACACGATGATCAGCCGAAGAAAATCTTGGTCGATGAAAGCTGCTGGACAAACGTTGACTTCTGTCGGACCAAGAAGATGACTGGATGGATGTATTTCGTATCGAAGACACTAGCAGAGCAAGCTGCGACCAAGTTTGCCAAAGAAAATAAACTCGACTTCATTTCCGTCATACCAACTCTTACAGTCGGCCCTTTCATCATGCAATCCTTCCCACCTAGCCTCATTACCGGACTTGCCCCCATTACCGGAAACGAAGATCATTATTCAATACTGAAGCAATGCCAGTTTGTTCACACGGATGACCTTTGTAACGCTCATATTTTCTTGTTCGAGCACCCGAAGGCTGAGGGCAGGTATATTTGCTCCTCTCACGACGCCACCATATTCGATGTTGCTAATCTGCTTAGGCGGAAATATCCAGAATACAACGTCCCCACAAAGTTCAATGGCATAGATGAGAACTTGGAGATAGTCTCTTTCTCTTCAAAAAAACTTAAAGACTTAGGTTTCGAGTTCAAATACAGCTTCGAAGAAATGTTCACCGGAGCTGTTGACACATGTCGGGACAAGGGATTATTGCAGCCTCCGCCCCTTCCATCTGTTTAA 1014 48.03 MEQDAGKTVCVTGASGFIGSWLVMRLLERGYTVRATVRDPGNIKKVKHLLDLPKAEGQLTLWKADLSDEGSFDEPIHGCVGVFHVATPMDFESKDPENEVIKPTVDGMMDIMKACVNAKTVRRVVLTSSAGAVAFGHDDQPKKILVDESCWTNVDFCRTKKMTGWMYFVSKTLAEQAATKFAKENKLDFISVIPTLTVGPFIMQSFPPSLITGLAPITGNEDHYSILKQCQFVHTDDLCNAHIFLFEHPKAEGRYICSSHDATIFDVANLLRRKYPEYNVPTKFNGIDENLEIVSFSSKKLKDLGFEFKYSFEEMFTGAVDTCRDKGLLQPPPLPSV 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9459233 9461302 - Conep17aG0138500.1 Cone17ag1352 456829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1352 337 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 320 IPR050425 GO:0009718(PANTHER)|GO:0016616(PANTHER)|GO:0045552(PANTHER)
Cone17ag1352 337 FunFam Dihydroflavonol reductase 6 331 - -
Cone17ag1352 337 Gene3D - 3 333 - -
Cone17ag1352 337 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 324 IPR036291 -
Cone17ag1352 337 Pfam NAD dependent epimerase/dehydratase family 9 252 IPR001509 -
Cone17ag1352 337 CDD FR_SDR_e 9 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1352 K13082 - - vvi:100233141 524.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0837 Cone-Chr17:6689345 Cone17ag1352 Cone-Chr17:9459233 5.88E-20 dispersed
Cone17ag1352 Cone-Chr17:9459233 Cone1ag0109 Cone-Chr1:601551 9.74E-100 dispersed
Cone15ag1133 Cone-Chr15:9224364 Cone17ag1352 Cone-Chr17:9459233 4.63E-83 transposed
Cone17ag1352 Cone-Chr17:9459233 Cone20ag0132 Cone-Chr20:590702 1.19E-186 wgd
Cone17ag1352 Cone-Chr17:9459233 Cone4ag1923 Cone-Chr4:13642175 4.99E-191 wgd
Cone17ag1352 Cone-Chr17:9459233 Cone7ag1835 Cone-Chr7:11945447 1.10E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1352 . . . . . Blo17g00784 . . Bda01g01499 Bpe02g01697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001471 4 1 2 1 2 2 1 2 2 1 1 2 2 1 2 2 2 4 2 2 2 4 3 2 2 1 6 4 4 6 72