Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1356 ATGCTGTTCCCTGAGCTGAGATTGAAGTCTACAAGTATTTATCTTCTACCTCTGAACAGCGAAGCATCTCTTATCTTCTCTTCTCTACCGCCTTCCACTCCTCTTCGGCCACTACACTATAAAAGCTTTTCCTCTTCTCCTTCTTGTCTTATCGTACAAAATTTAGCTTTGTCTGTTCATATCTTTAAGAAATCTGTAAATATCTTACATCTCTATAGTGATTTCGCTTTCCTTGTTCGGAATTGGAAGTTTCTGGAAAGTCTGTGTGATCGAGAATCTAAAGGGAAAGATTACCTGAGTGTAGCTGCGATCGCAGATTCTCCGTTTGGATTTGAGGAGGTCGGTACTAGGCTTTTGAAGGAGGTCGAATGGGGTCTTTGCAGGGGCCAGTTATTTGCCCCACTATTCGTGCAAAGCAAGCAGGGAGTGATTGGTAGCAAGAGTGCTAAGGTGGCCTATCCTTATGACCCGATTAACTTGAGAAAGTGCGGAATAGTACATTGTACTTTCAGTTCATCATCAGATGGCAGTGGAAGCACTGCAGAGAACTTTAATCAGAATGATGAAGATTATGTCAATTCTAGTGTAGTCGAGGCCGTGGAGGTGAAGAGTGGAGCAGATGGGTTCATGATCAAAATGAGAGATGGAAGACACTTGAGATGCGTTCATAATCGTCCTCAGGGTGGTCATCTGCCAGATTATGCTCCACATCCTGCTATAGTATTAAAGTTGGAAGATGGGACGGGCCTCCTTCTCCCTATTATTGTTTTGGAGATGCCAAGTGCATTGCTCATGGCAGCAGTGCGCAATGTTCAGATTGCTAGACCTACTCTGTATCAAGTGGTGAAAGAGATGATTGACAAGATGGGCTATGAAGTCAAACTGGTTAGAGTTACCAAGAGGGTGCATGAAGCATATTTTGCTCGGTTATACCTCACCAAGATCGGTAGCGAGACCGAATATATCAGCTTTGATCTCCGCCCCTCAGATGCGATCAACATTGCTGTGAGATGCAAGGTCCCCATACAAGTGAATAAATATTTGGCATATAGTGATGGTATGAAAATCGTTGAATCTGCCAAGCTTTCATTACAGGTCCCGGGCTCTGATGGCTTATTATTTGCAGAATTGGACAGACCTAGCGGTCAGCCATGTGTTGAAACGAAGGAGTTTGATCTTATCCGCAACATGTTAATAGCTGCCGTTGAGGAGCGCTACCGAGATGCTGGTATAATTTATTTATTTTTCCATTTTCAGCTCAATGGAGGGACAAACTCAACGTACTTCGGGCTAAACGGAACTTGGCCTAATTATAGTTCTCCATTTTTGGCGTCTGCAAACTTGAGTTCTTCATCTGCCGACAGTATATCCATGGCGAGCACACTAGACAAGTTCGCCAGGCCATGTTTTGATGGATCTTCTGGAAATGACGAGAAAAGAGAGAGGAAATCTGATATTGAAGTCTCGGAGGATGAAAAGAAGTCCAGGATAGGGAAGCTCAAGAAGAAAGCACTTAATGCCTCTAGTAAATTCAGGCATTCGCTTAGGAAAAAGAGCAAGAGAAAAATCGGCCGTCCGAGCAACTCTGTTTCGATCGAGGACGTTCGAGATGTTGAGGAGCTGCGTGCTGTTGAAGATTTTCGACTAGCACTGAACATGGATGAGTTACTACCTCCAAGGCACGATGATTATCATACGTTGTTGAGGTTCTTGAAGGCAAGGAAGTTTGATATTGAGAAAGCAAAGCAAATGTGGATCAACATGCTTCATTGGAGGAGAGATTTCGGTACTGATAGTATCATCGAGGATTTTGAGTACAGTGAATTGAGTGAAGTTCTTGAGTGCTACCCTCAGGGTTATCATGGTGTGGATAAGGAGGGAAGGCCTGTTTATATTGAAAGACTAGGAAAAGTAGATCCGAGCAAGCTGATGCAAGTGACCACTCTCGAACGGTACATAATGTATCATGTTAAGGAATTCGAAAGGAGTCTTTCCATTAAGTTTCCAGCTTGCTCTATTGCTGCCAAGAGACACATTGATTCCAGCACCACAATTTTGGACGTTCAAGGCGTAGGTCTGAAAAACCTAATCAAACCTGCACGAGATCTCATTTCACAACTGCAGAAGATTGATAATGATAACTATCCTGAGACACTATATAGAATGTTTGTCATTAATGCTGGCCCTGGTTTTAAGCTACTTTGGAATTCCGTGAAGTCTTTTCTGGATCCGAAAACTGCTTCTAAGATACATGTCCTTGGTTACAAGTACCAGAACAAGTTACTTGAAATAATTGATGCCAGTGAGCTGCCAGAATTTCTGGGCGGTACCTGTACCTGTGCTGTTATTGGAGGTTGTTTGAGATCTGATAAGGGGCCATGGAATGATCCTGACATATTAAAGATGATTTCTGGTGGCGAAGCACAATGCTCCAGAAAAATAGTAACAGTTTCAAACTGTGAAGGGAGGGTGGTTGTTTGCGACAAGGCATGCATAAAGATGATAAAAGGCAGTGACACATCTACGGGAGAATCAGGATCTGAAGCTGAAGAAATTTCTTCTCCAAAAGCAATTAAGAGCTATGTAACGCCTAGTTTAACCTCTGTCTGTGAAGAAGCTAAAGTGGGTGGCAAAGTAAACCATACTGATGGTTTCTCAGAGAGCGCAGAATATGTTCCTTTGGTTGACAAGGTTGTGGATCCAGAATGCGAAACACAAGTTTTGTATCGGGATACATCTTTTGGAGGGAATCCTTTGCCAAGTCCAGAGAAAGCTGTAGAGGGTATGTGTGCTCATATCTGGGCTGTGATAGTGACCTTTTGCATTACCCTTTTCACTCTCATTCAATCAGCAGCTTTCCGTATGATTAAGAAAATTCCCGGCTCTTTCTTCTATCCTACTCTATCCATTCCTGACGTTACTCTTGAGTCAAATGTGAAGGAATCTGATGCTTCTATTAAAGCTCCTGAACCTTTTAAGGAAGATTTCTTATCTTCTGCTTCACAAAAACTGTGTGAGCTTGAGGAGAGGGTAAATATGCTAGAGGCAAGGCGGTCCCAGATGCCCTTTGAGAAAGAGGAATTGCTGAATGCTGCTATATATCGCGTGGATGCACTAGAAGCAGAACTCATCTCCACAAAGAAGGCTTTACATGAAGCTTTAATGAAGCAAGAGGAGCTTCTGGCATTCATAGATAGGCAAGAAGCTGCCAGCGTAAAACTAAATTCTGCTGGTGAAGGAGAATTCAGTGCTAGAAAGAAGACCTTCTGTAAACTTCTATACATCAAATCCACTCACGCTCCAGCGGGCACTCCAAATATTGATAATGCCCATCCCCAGAGAAGTTATCAAGCCGTATTCGCTGCAACACAAGAAATGGGCATAGGAAAGGACGGGAAGCTTCCGTGGAGTCTGCCTTCTGATCTCAAATTCTTCAAGCAGCTCACATTTTCTACATCCGATCCCAAAACAAAGAAGAACGCCGTCATAATGGGCCGGAAAACTTGGTCCAGCATCCCCATTACGTACAGGCCTCTAGCCGACCGTCTAAACGTTGTATTGACCCGTCGTTCTATGAATCTCGATATCACATCTTCCAATGACGTTTTGACATGTGGAAGCCTCCCACTGTCTCTGAAGCTACTGGCAGAGCCTCCTTATTCCTCATCAACAGAGAAAGTGTCTGTCATTGGAGGTGGGGAGGTATTGAAGGAAGCACTGAATGATCCAGGATGTGAAGCCATCCATGCTACTGAAATTGAGACAGACATTGAATGTGACACCTTTGTTCCCAGGATTGACTTGTCTGTGTTTAAATTGCACTACTCGCCTGGACTAGTTGTGGAAAATAATGTTCGATTTTGCTTTAAGACTTATGTTCGTGCAGTAGAGAACTGA 3897 43.34 MLFPELRLKSTSIYLLPLNSEASLIFSSLPPSTPLRPLHYKSFSSSPSCLIVQNLALSVHIFKKSVNILHLYSDFAFLVRNWKFLESLCDRESKGKDYLSVAAIADSPFGFEEVGTRLLKEVEWGLCRGQLFAPLFVQSKQGVIGSKSAKVAYPYDPINLRKCGIVHCTFSSSSDGSGSTAENFNQNDEDYVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNRPQGGHLPDYAPHPAIVLKLEDGTGLLLPIIVLEMPSALLMAAVRNVQIARPTLYQVVKEMIDKMGYEVKLVRVTKRVHEAYFARLYLTKIGSETEYISFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMKIVESAKLSLQVPGSDGLLFAELDRPSGQPCVETKEFDLIRNMLIAAVEERYRDAGIIYLFFHFQLNGGTNSTYFGLNGTWPNYSSPFLASANLSSSSADSISMASTLDKFARPCFDGSSGNDEKRERKSDIEVSEDEKKSRIGKLKKKALNASSKFRHSLRKKSKRKIGRPSNSVSIEDVRDVEELRAVEDFRLALNMDELLPPRHDDYHTLLRFLKARKFDIEKAKQMWINMLHWRRDFGTDSIIEDFEYSELSEVLECYPQGYHGVDKEGRPVYIERLGKVDPSKLMQVTTLERYIMYHVKEFERSLSIKFPACSIAAKRHIDSSTTILDVQGVGLKNLIKPARDLISQLQKIDNDNYPETLYRMFVINAGPGFKLLWNSVKSFLDPKTASKIHVLGYKYQNKLLEIIDASELPEFLGGTCTCAVIGGCLRSDKGPWNDPDILKMISGGEAQCSRKIVTVSNCEGRVVVCDKACIKMIKGSDTSTGESGSEAEEISSPKAIKSYVTPSLTSVCEEAKVGGKVNHTDGFSESAEYVPLVDKVVDPECETQVLYRDTSFGGNPLPSPEKAVEGMCAHIWAVIVTFCITLFTLIQSAAFRMIKKIPGSFFYPTLSIPDVTLESNVKESDASIKAPEPFKEDFLSSASQKLCELEERVNMLEARRSQMPFEKEELLNAAIYRVDALEAELISTKKALHEALMKQEELLAFIDRQEAASVKLNSAGEGEFSARKKTFCKLLYIKSTHAPAGTPNIDNAHPQRSYQAVFAATQEMGIGKDGKLPWSLPSDLKFFKQLTFSTSDPKTKKNAVIMGRKTWSSIPITYRPLADRLNVVLTRRSMNLDITSSNDVLTCGSLPLSLKLLAEPPYSSSTEKVSVIGGGEVLKEALNDPGCEAIHATEIETDIECDTFVPRIDLSVFKLHYSPGLVVENNVRFCFKTYVRAVEN 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9475939 9486129 - Conep17aG0138900.1 Cone17ag1356 456833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1356 1298 Gene3D Bifunctional nuclease domain 227 362 IPR036104 GO:0004518(InterPro)
Cone17ag1356 1298 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 221 356 IPR003729 GO:0004518(InterPro)
Cone17ag1356 1298 SMART CRAL_TRIO_N_2 563 588 IPR011074 -
Cone17ag1356 1298 Pfam Dihydrofolate reductase 1118 1294 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone17ag1356 1298 SUPERFAMILY CRAL/TRIO domain 607 802 IPR036865 -
Cone17ag1356 1298 MobiDBLite consensus disorder prediction 473 493 - -
Cone17ag1356 1298 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 1127 1149 IPR017925 GO:0004146(InterPro)
Cone17ag1356 1298 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 478 1067 IPR051026 -
Cone17ag1356 1298 Gene3D Dihydrofolate Reductase, subunit A 1101 1294 IPR024072 -
Cone17ag1356 1298 Gene3D - 525 595 - -
Cone17ag1356 1298 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1115 1294 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone17ag1356 1298 Pfam CRAL/TRIO domain 614 776 IPR001251 -
Cone17ag1356 1298 FunFam SEC14 cytosolic factor 596 808 - -
Cone17ag1356 1298 Pfam CRAL/TRIO, N-terminal domain 560 587 IPR011074 -
Cone17ag1356 1298 CDD SEC14 609 777 IPR001251 -
Cone17ag1356 1298 Pfam Bifunctional nuclease domain 240 353 IPR003729 GO:0004518(InterPro)
Cone17ag1356 1298 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 608 782 IPR001251 -
Cone17ag1356 1298 SUPERFAMILY CRAL/TRIO N-terminal domain 538 604 IPR036273 -
Cone17ag1356 1298 Coils Coil 1036 1056 - -
Cone17ag1356 1298 Gene3D - 596 807 IPR036865 -
Cone17ag1356 1298 SMART sec14_4 608 779 IPR001251 -
Cone17ag1356 1298 PRINTS Dihydrofolate reductase signature 1141 1149 - -
Cone17ag1356 1298 PRINTS Dihydrofolate reductase signature 1226 1240 - -
Cone17ag1356 1298 PRINTS Dihydrofolate reductase signature 1127 1137 - -
Cone17ag1356 1298 PRINTS Dihydrofolate reductase signature 1162 1173 - -
Cone17ag1356 1298 SUPERFAMILY Hypothetical protein TM0160 221 359 IPR036104 GO:0004518(InterPro)
Cone17ag1356 1298 CDD DHFR 1118 1293 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cone17ag1356 1298 SUPERFAMILY Dihydrofolate reductase-like 1115 1294 IPR024072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1356 K26544 - - gmx:100812774 777.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1268 Cone-Chr14:10157359 Cone17ag1356 Cone-Chr17:9475939 3.04E-142 dispersed
Cone17ag0710 Cone-Chr17:4943670 Cone17ag1356 Cone-Chr17:9475939 1.12E-46 dispersed
Cone17ag1356 Cone-Chr17:9475939 Cone20ag0126 Cone-Chr20:561561 8.85e-316 dispersed
Cone12ag1160 Cone-Chr12:9232421 Cone17ag1356 Cone-Chr17:9475939 6.31E-36 wgd
Cone17ag1356 Cone-Chr17:9475939 Cone20ag0125 Cone-Chr20:557236 6.39E-170 wgd
Cone17ag1356 Cone-Chr17:9475939 Cone4ag1930 Cone-Chr4:13658176 8.26E-252 wgd
Cone17ag1356 Cone-Chr17:9475939 Cone7ag1842 Cone-Chr7:11961413 1.40E-164 wgd
Cone17ag1356 Cone-Chr17:9475939 Cone8ag1209 Cone-Chr8:10262355 1.54E-61 wgd
Cone17ag1356 Cone-Chr17:9475939 Cone9ag1571 Cone-Chr9:11324351 1.66E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1930 . Cone17ag1356 Cone20ag0126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00398 Cam11g0444 Cec11g0439 Cco11g0431 Clacu11g0567 Cmu11g0423 Cre11g0908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019453 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 4