Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1359 ATGGCAACGCCAGTTGAGCCTCCAAACGGAATTAGATCGGAAGGAAAGCATTACTACTCAATGTGGAAAACTTTGTTTGAGATTGATACTAAGTATGTACCTATCAAGCCAATTGGGCGAGGAGCATATGGGGTCGTGTGCTCTTCTTTGAACAGGGAAACTAATGAGAAAGTCGCGATTAAAAGGATCCACAGTGCGTTTGAGAATCGAGTTGATGCCCTTAGAACTTTGCGTGAATTGAAGCTTCTTAGAAATCTTCGACATGGAAATGTGATTGCTTTGAAAGATGTTATGATGCCCGTGCATAGGAGAAGTTTTAAGGATGTGTATCTAGTTTATGAACTTATGGATACAGATCTGCATCAGATTATTAAGTCTTCTCAGGCTCTTACCAATGATCATTGCCAGTACTTTCTCTTTCAGCTGCTTCGAGGCCTAAAATATCTCCACTCAGCAAACATTCTTCACCGTGATTTGAAGCCTGGAAATCTGCTTGTCAATGCAAATTGCGACCTAAAAATATGTGATTTCGGATTAGCACGAGCAAGCAATGGAAAGAATCAATTCCTGACGGAGTATGTTGTCACCCGCTGGTACCGGGCTCCAGAGCTCCTCCTGTGCTGTGACAATTACGGCACATCAATCGATGTATGGTCTGTAGGCTGCATCTTTGCAGAGCTACTGGGCAGAAAACCCATCTTCCCTGGAACAGAGTGTCTAAACCAGCTCAAACTGATTATCAACATCCTAGGTAGCCAAAGGGAGGAAGACCTTGCATTTATAGACAACCTCAAGGCGAGACAGTACATCAAATCCCTCCCATTTTCTCCCGGTACACCGTTTTCCCATCTTTATCCAAACGCTCATCCTAATGCAATCGATCTGCTGCAAAGAATGCTTGTTTTCGATCCATCGAAGAGGATTAGTGTTACTGAAGCGTTGCACCACCCTTATATGTCCTCACTATATGATCCGAATCGTAATCCTCCAGCTGAGGTACCCATTGATGATCTCGACGTAGATGAGGAGTTAGGGGAAGAAATGATAAGGGAGATGATGTGGAGTGAAATGCTTCATTACCATCCCGGATTTCAAACCGCTACATCCAATGGAGAGGTGTGTTCTTAG 1128 43.71 MATPVEPPNGIRSEGKHYYSMWKTLFEIDTKYVPIKPIGRGAYGVVCSSLNRETNEKVAIKRIHSAFENRVDALRTLRELKLLRNLRHGNVIALKDVMMPVHRRSFKDVYLVYELMDTDLHQIIKSSQALTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARASNGKNQFLTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLAFIDNLKARQYIKSLPFSPGTPFSHLYPNAHPNAIDLLQRMLVFDPSKRISVTEALHHPYMSSLYDPNRNPPAEVPIDDLDVDEELGEEMIREMMWSEMLHYHPGFQTATSNGEVCS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9508131 9510636 + Conep17aG0139200.1 Cone17ag1359 456836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1359 375 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1359 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 358 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cone17ag1359 375 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1359 375 FunFam Mitogen-activated protein kinase 116 346 - -
Cone17ag1359 375 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1359 375 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524(InterPro)
Cone17ag1359 375 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Cone17ag1359 375 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Cone17ag1359 375 Gene3D Transferase(Phosphotransferase) domain 1 116 346 - -
Cone17ag1359 375 FunFam Mitogen-activated protein kinase 18 126 - -
Cone17ag1359 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1359 375 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1359 375 CDD STKc_TEY_MAPK 26 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1359 Cone-Chr17:9508131 Cone18ag0309 Cone-Chr18:1516153 4.99E-148 dispersed
Cone6ag0456 Cone-Chr6:2237611 Cone17ag1359 Cone-Chr17:9508131 3.50E-29 dispersed
Cone9ag0467 Cone-Chr9:2222296 Cone17ag1359 Cone-Chr17:9508131 7.96E-30 dispersed
Cone17ag1359 Cone-Chr17:9508131 Cone7ag1843 Cone-Chr7:11965721 1.98E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82288 PF00957 Synaptobrevin 7.20E-29 CL0445 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1359 K20535 - vvi:100254083 687.567