Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1363 ATGACTGCATGCTTTTCCAGCTCTTTCTGTCGTCCATGTCCTCTAATCAACGAGCTCAATTTCCTTCGCAATCGTCCTATTTCCCCCCTTTTTACTCTTAGAAACGATTCGTACGCTTCTTCTAGTTGCAGAGCATTATTTCATGCCAATCCGCTTCAACAGGGTCTGGGCGTAGTTTCCCCTGACGATGGTTCTGTGCCGAATCCAGTGATTTCTCCTGATGGAGTTGAAGTTGGAGATAAGGAAGATGATCGTGGAGTTTTAAATGGAGCTTCCGCCACCAAATTGGTGGATAAAAATCAACTTTCGTCGAGTAGGATTAAGAAGAAGAGGGATGATGAGGACAGCTTCGAGAATAGGTTCAAGCTGCGAAATGGAAGAGAGGTTTTTGAAGAAAAAGCTTATCTGGTGGGAGTTGAGCTGAAAGGGGACAAAGAGGATTCCTTTTGCACCGATGAATCGCTCAAGGAACTGGCCCAGCTAGCTGACACTGCTGGACTTGCGGTTGTTGGTTCCACATATCAAAAACTAGCATCACCAAATCCGAGGACTTACATTGGGTCTGGAAAGGTTTCAGAAATTAAGAGTGCAATTCATGCATTTGATGTTGAAACTGTAATATTTGATGACGAGCTTTCAGCTGGGCAATTGCGCAATTTGGAAAAGGCTTTTGGTGGAGATGTCAGAGTTTGTGACCGTACTGCTCTCATCCTTGATATATTTAACCAGAGAGCAGCAACACATGAAGCAGCCTTACAGGTTGCATTGGCACAAATGGAATACCAGCTGCCTCGACTAACCAAGATGTGGACTCATCTTGAACGTCAAGCAGGAGGTAAGGTGAAGGGAATGGGTGAGAAACAAATTGAGGTGGACAAACGTATTCTAAGAACACAAATTGGTATTCTCAAAAAGGAATTAGAGTCTGTTAGAAAGCATCGAAAGCAGTACCGAAACCAGCGTTTGTCTGTACCTGTCCCAGTTGTATCTTTGGTTGGATACACAAATGCTGGAAAGAGCACACTCTTAAATCATTTGACTGGAGCTAATGTCCTCTCTGAGGATCGATTATTTGCAACACTTGATCCGACTACAAGAAGGGTTCAGATGAAGAATGGGAAGGAATTCCTTCTAACAGATACTGTTGGTTTCATCCAGAAGTTACCAACTACACTGATTGCTGCCTTCAGAGCCACATTGGAGGAAATATCCGAATCATCATTATTGGTGCATGTGGTTGATATCAGCCATCCTCTAGCTGAGCAGCAGATAGATGCAGTTGACAAAGTTCTTTCAGAACTGGATGTATCGTCTATCCCTAAGTTGATGATCTGGAACAAGGTTGATAAAGTGAGCAATCCCCAAACTATCAGACTTGAAGCCGAGAAGAGAGAAGATGTCGTTTGCGTATCTGCACTGACTGGTGAAGGGTTAGACAAATTTTGTGATGCAGTTCACGAAAAATTGAAGGACTCCATGGTTTGGGTGGAAGCTTTAATACCATTCGACAAAGGGGAGCTCCTTAACACTGTACATAAGGTTGGAATGGTGGAGAGAACGGAATATACGGAAAACGGGACCTTGGTGAAGGCATATGTGCCCCTACGATTTGCAAGGATGCTCACACCAATGAGGCAACTTTGTATATCATGA 1653 43.68 MTACFSSSFCRPCPLINELNFLRNRPISPLFTLRNDSYASSSCRALFHANPLQQGLGVVSPDDGSVPNPVISPDGVEVGDKEDDRGVLNGASATKLVDKNQLSSSRIKKKRDDEDSFENRFKLRNGREVFEEKAYLVGVELKGDKEDSFCTDESLKELAQLADTAGLAVVGSTYQKLASPNPRTYIGSGKVSEIKSAIHAFDVETVIFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQVALAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRTQIGILKKELESVRKHRKQYRNQRLSVPVPVVSLVGYTNAGKSTLLNHLTGANVLSEDRLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLIAAFRATLEEISESSLLVHVVDISHPLAEQQIDAVDKVLSELDVSSIPKLMIWNKVDKVSNPQTIRLEAEKREDVVCVSALTGEGLDKFCDAVHEKLKDSMVWVEALIPFDKGELLNTVHKVGMVERTEYTENGTLVKAYVPLRFARMLTPMRQLCIS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9519041 9522276 + Conep17aG0139700.1 Cone17ag1363 456840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1363 550 Pfam 50S ribosome-binding GTPase 329 447 IPR006073 GO:0005525(InterPro)
Cone17ag1363 550 Coils Coil 300 320 - -
Cone17ag1363 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 499 IPR027417 -
Cone17ag1363 550 Pfam GTP-binding GTPase N-terminal 153 241 IPR025121 -
Cone17ag1363 550 Gene3D - 326 494 IPR027417 -
Cone17ag1363 550 PANTHER GTP-BINDING PROTEIN HFLX 98 525 IPR016496 GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0043022(PANTHER)
Cone17ag1363 550 Pfam HflX C-terminal domain 459 528 IPR045498 -
Cone17ag1363 550 NCBIfam GTPase HflX 133 489 IPR016496 GO:0005525(InterPro)
Cone17ag1363 550 Gene3D - 245 312 - -
Cone17ag1363 550 NCBIfam small GTP-binding protein domain 328 485 IPR005225 GO:0005525(InterPro)
Cone17ag1363 550 FunFam Predicted protein 146 268 - -
Cone17ag1363 550 FunFam GTPase HflX 326 495 - -
Cone17ag1363 550 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 327 493 IPR030394 GO:0005525(InterPro)
Cone17ag1363 550 Gene3D - 145 244 IPR042108 -
Cone17ag1363 550 Pfam GTP-binding GTPase Middle Region 244 321 IPR032305 -
Cone17ag1363 550 CDD HflX 286 489 IPR030394 GO:0005525(InterPro)
Cone17ag1363 550 Hamap GTPase HflX [hflX]. 155 518 IPR016496 GO:0005525(InterPro)
Cone17ag1363 550 PRINTS GTP1/OBG GTP-binding protein family signature 396 414 IPR006073 GO:0005525(InterPro)
Cone17ag1363 550 PRINTS GTP1/OBG GTP-binding protein family signature 329 349 IPR006073 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1363 K03665 - - vvi:100247233 805.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0185 Cone-Chr12:912016 Cone17ag1363 Cone-Chr17:9519041 7.48E-38 dispersed
Cone17ag1363 Cone-Chr17:9519041 Cone20ag0118 Cone-Chr20:524054 5.98E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30