Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1365 ATGGCTACTAAGCTTCTCTTGACGTTCGCGATTTGCCGATTAATAAGCACAGTCGGGTTGACAGTGGACCCCACGGAGCTTCTACGATTAGGAGTCGACGGCCAGATCAGCGTCGACCCATCGGACAAGAAAGCAGCTTCCATGGACTTTGGTATGATGAGCAGAGGAGCCGAGCCGCTAGCCGTGTTGCACCCTGCCTCGGCGCAAGATATCGCCAGGCTAGTCCGAGCAGCTTATGACTCGATGTTGGCGAACGGTTTCACCGTGTCGGCTAGAGGACATGGACATTCGATCAACGGTCAGACTCAGACAGAAAACGGCGTGGTGGTTGAGATGAGCGGTGGCTCGAGAGGCGTTGTCAAGACGGTGGCTCAGCCGCTGGTTTTTGAGGAGGGAAGGTACGTGGATGTGTGGGGTGGGGAGCTGTGGATAGATGTGCTCAATTCCACGTTAAAGTATGGACTCGCACCAAAATCCTGGACGGATTATTTGTACTTATCAGTCGGTGGAACGCTTTCAAACGCAGGAATTAGTGGTCAAGCGTTTAATCATGGCCCTCAGATTAGCAATGTGTATGAGCTTGACGTTGTTACAGGAAAGGGTGTGCTTTTGACATGTTCTGAGGAACAAAACTCAGACTTGTTCCATGCCGTTCTCGGCGGTCTCGGTCAGTTCGGAATCATCACTCGAGCCCGAATTGCTCTCGAACCGGCTCCTCAAAGGGTGAGGTGGGTTAGAGTACTGTACTCTAATTTCTCGGCATTTACTAGGGACCAAGAATATCTCATATCGTTGCATGGGAATGCATCTGCACAGAAGTTTGATTACGTGGAGGGTTTTGTGATTGTGGATGAAGGGCTTATAAATAACTGGAGATCATCTTTCTTTTCACCAAGTAATCCTGTTAAGATCTCTTCGCTTAATCATGCTAATGGTGGTGTGCTATACTGCTTGGAGATCACAAAAAATTACGATGAGTCCACAGCAGATACCATTGATCAGGAAGTGGAAGCGTTGTTGAAAAAATTGAATTTTATAAAGACATCAGTCTTCACGACGGATCTTGGTTACGTGGATTTCTTGGACCGGGTCCACAAGGCGGAGCTGAAGCTCCGATCTAAGGGTCTGTGGGACGTGGCACACCCGTGGCTCATCCTTTTCATTCCAAAGTCTAAGATTGCTGACTTCGATAAGGGAGTTTTCAAGGGCATTTTGGGAAATAAGACAAGTGGGCCCATTCTCATTTATCCCATGAACAAGGACAAGTGGAACCAGAGGACCTCCGTGGTGACGCCGGATGAGGACGTGTTTTACCTGGTGGCGTTGTTAAGATCGGCTTTGGAGAACGGGGAGGGGACTCAGTCATTGGAGTACCTGAGCAATCAGAACCGACAGATCCTCAGATTCTGTGATGATGCGGGGATCAAGATGAAACAGTACCTACCCCACTACACATCACAGGAGGAGTGGATGGACCACTTTGGAGATAAGTGGGCCCAGTTCCATCGGAGAAAGATGGAGTTTGATCCTCGGCGTATATTAGCTACAGGCCAACGCATATTCAAACCTTTAATTTCTTATAATAAGATGGTTTCTTCATGGCGATGA 1608 48.57 MATKLLLTFAICRLISTVGLTVDPTELLRLGVDGQISVDPSDKKAASMDFGMMSRGAEPLAVLHPASAQDIARLVRAAYDSMLANGFTVSARGHGHSINGQTQTENGVVVEMSGGSRGVVKTVAQPLVFEEGRYVDVWGGELWIDVLNSTLKYGLAPKSWTDYLYLSVGGTLSNAGISGQAFNHGPQISNVYELDVVTGKGVLLTCSEEQNSDLFHAVLGGLGQFGIITRARIALEPAPQRVRWVRVLYSNFSAFTRDQEYLISLHGNASAQKFDYVEGFVIVDEGLINNWRSSFFSPSNPVKISSLNHANGGVLYCLEITKNYDESTADTIDQEVEALLKKLNFIKTSVFTTDLGYVDFLDRVHKAELKLRSKGLWDVAHPWLILFIPKSKIADFDKGVFKGILGNKTSGPILIYPMNKDKWNQRTSVVTPDEDVFYLVALLRSALENGEGTQSLEYLSNQNRQILRFCDDAGIKMKQYLPHYTSQEEWMDHFGDKWAQFHRRKMEFDPRRILATGQRIFKPLISYNKMVSSWR 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9524244 9529026 - Conep17aG0139900.1 Cone17ag1365 456842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1365 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 239 521 IPR016164 GO:0003824(InterPro)|GO:0050660(InterPro)
Cone17ag1365 535 Gene3D - 46 522 IPR016167 -
Cone17ag1365 535 FunFam Cytokinin dehydrogenase 1 116 240 - -
Cone17ag1365 535 FunFam Cytokinin dehydrogenase 2 241 480 - -
Cone17ag1365 535 Pfam FAD binding domain 59 207 IPR006094 GO:0050660(InterPro)
Cone17ag1365 535 PANTHER GULONOLACTONE OXIDASE 32 522 IPR050432 GO:0016491(PANTHER)
Cone17ag1365 535 Gene3D - 112 240 IPR016169 -
Cone17ag1365 535 Gene3D - 242 480 IPR016170 -
Cone17ag1365 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 55 238 IPR016166 GO:0071949(InterPro)
Cone17ag1365 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 33 237 IPR036318 GO:0050660(InterPro)
Cone17ag1365 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 239 521 IPR015345 GO:0009690(InterPro)|GO:0019139(InterPro)|GO:0050660(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1365 K00279 - - rcu:8275787 874.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1365 Cone-Chr17:9524244 Cone1ag1479 Cone-Chr1:57057996 3.05E-183 dispersed
Cone17ag1365 Cone-Chr17:9524244 Cone20ag0116 Cone-Chr20:515618 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34