Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1369 ATGCCTCTAGACAGTGATGTTTTTAGGATCCCTCCTGGTTATAATGCTCCTCAACAGGTTCATATAACACAAGGAGATCATGAGGGGAAAGGTGTGATCGTTTCTTGGGTTACCCCAGATGAACCGGGTTCAAGCACTGTGGTTTACTGGTCTGAAAACAATGAGCTCAAGAACCAAGCAGATGGCTTTTTTGTCACTTACAACTACTTTAATTATACATCTGGGTATATTCATCACTGCACTATTGTAGACTTGGAGTTTGATACCAAATACTACTATGAGGTCGGAATTGGAAACACAACACGACAATTTTGGTTTATCACTCCTCCTAGGGTTGGCCCTGATGTGCCTTATACCTTTGGCCTCATCGGGGATCTTGGTCAAACCCATGATTCAAATAGGACTCTTACACATTACGAATCAAGCCCCATAAAAGGACAGGCAGTTTTATTTGTTGGAGACCTTTCTTATGCTGATGATTACCCCTTTCATGATAATAACAGGTGGGATACTTGGGGAAGATTCTTGGAAAGAAGTGTAGCTTATCAACCTTGGGTTTGGACTGCTGGAAATCATGAACTCGATTTTGCACCTCAAATTGGTGAAGGCATACCATTTAAACCTTTTACTCATCGTTATCATGTACCATATAAGGCATCTGATAGCACGTCTCCTCTCTGGTACTCCATTAAGAGGGCTTCAGCGTATATAATAGTCATGTCCTCGTACTCAGCATTTGGGAAATACACTCCTCAATACAAGTGGCTGGAACAGGAGCTTCCGAAAGTAAACAGAACGGAAACACCATGGCTCGTAGTTCTTATGCATTCTCCTCTATACAATAGCTATATAAAACATTATATGGAAGGAGAAACTATGAGAGTGATGTATGAATCATGGTTCGTCGAGTATAAAGTCGATGCTATCTTTGCTGGACATGTTCATGCCTACGAACGATCCGAGCGCATATCGAATGATGCATACAATGTTACAAATGGGTTATGCACTCCTGTGGCTAATAAATCTGCTCCTGTTTACATAACCATCGGAGATGGAGGAAATCTAGAAGGATTGGCGTCTCAGATGACAGAGCCACAGCCGAGCTACTCGGCTTTTCGAGAAGCAAGCTTTGGCCATGGAATTTTGGAGATAAAGAATAGGACTCATGCTTATTTTGGTTGGAATAGAAATGAAGATGGATATGCCGTAGAGGCTGATTCTATTTGGCTGCATAATAGAATTTGGTATGCTGAAGATGAAGAACAATCGTCCGCTGCTGCAATGTAA 1287 41.72 MPLDSDVFRIPPGYNAPQQVHITQGDHEGKGVIVSWVTPDEPGSSTVVYWSENNELKNQADGFFVTYNYFNYTSGYIHHCTIVDLEFDTKYYYEVGIGNTTRQFWFITPPRVGPDVPYTFGLIGDLGQTHDSNRTLTHYESSPIKGQAVLFVGDLSYADDYPFHDNNRWDTWGRFLERSVAYQPWVWTAGNHELDFAPQIGEGIPFKPFTHRYHVPYKASDSTSPLWYSIKRASAYIIVMSSYSAFGKYTPQYKWLEQELPKVNRTETPWLVVLMHSPLYNSYIKHYMEGETMRVMYESWFVEYKVDAIFAGHVHAYERSERISNDAYNVTNGLCTPVANKSAPVYITIGDGGNLEGLASQMTEPQPSYSAFREASFGHGILEIKNRTHAYFGWNRNEDGYAVEADSIWLHNRIWYAEDEEQSSAAAM 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9537564 9539937 - Conep17aG0140300.1 Cone17ag1369 456846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1369 428 CDD MPP_PAPs 114 412 IPR041792 -
Cone17ag1369 428 SUPERFAMILY Metallo-dependent phosphatases 114 416 IPR029052 -
Cone17ag1369 428 ProSiteProfiles Fibronectin type-III domain profile. 16 111 IPR003961 GO:0005515(InterPro)
Cone17ag1369 428 PANTHER ACID PHOSPHATASE RELATED 2 417 IPR039331 GO:0003993(InterPro)
Cone17ag1369 428 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 16 112 - -
Cone17ag1369 428 Pfam Iron/zinc purple acid phosphatase-like protein C 343 400 IPR025733 -
Cone17ag1369 428 Gene3D - 16 111 - -
Cone17ag1369 428 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 113 421 - -
Cone17ag1369 428 Gene3D - 113 422 IPR029052 -
Cone17ag1369 428 Pfam Calcineurin-like phosphoesterase 119 317 IPR004843 GO:0016787(InterPro)
Cone17ag1369 428 Pfam Purple acid Phosphatase, N-terminal domain 17 108 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone17ag1369 428 SUPERFAMILY Purple acid phosphatase, N-terminal domain 1 110 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1369 K22390 - - gmx:100794124 780.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1010 Cone-Chr17:7724404 Cone17ag1369 Cone-Chr17:9537564 3.18E-191 dispersed
Cone17ag1369 Cone-Chr17:9537564 Cone7ag0608 Cone-Chr7:2960490 1.13E-205 dispersed
Cone12ag1174 Cone-Chr12:9296505 Cone17ag1369 Cone-Chr17:9537564 8.23E-214 wgd
Cone17ag1369 Cone-Chr17:9537564 Cone20ag0110 Cone-Chr20:496952 5.91E-69 wgd
Cone17ag1369 Cone-Chr17:9537564 Cone6ag1657 Cone-Chr6:12638475 1.35E-229 wgd
Cone17ag1369 Cone-Chr17:9537564 Cone8ag1220 Cone-Chr8:10324613 1.33E-255 wgd
Cone17ag1369 Cone-Chr17:9537564 Cone9ag1581 Cone-Chr9:11354951 2.22E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1025 . . . . . . . . . Cmo12g00387 . . . Car12g00413 . . Cpe07g00391 . . . . . . . . . . . . . . . . Cone17ag1369 . . . . Cme03g01915 . . . . . . . . . . . Cma12g00436 . . . . . . . . . . . . . . . . . . . . Csa02g02096 Chy03g01418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97