Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1374 ATGGACCGATCAACCCTGCACGCTATCCTCTTCACTTCCCTTCTATCCGCTGTCGTAGCGTCCACCATATCCTCCGACGATTCTCTGATTCGACAAGTCGTATCGGGCGGAGACGATGATCAACTGCTGAGTGCTGAGCACCCCTTCGCGAACTTTAAAGCTAAATTCGGAAAGACCTACGCCGATCAAGAGGAGCACGATTTCAGGTTTACCGTCTTCAAGAGTAACTTGCGCAGAGCAAAGCGTCACCAGAAGCTCGATCCTACTGCTGTCCATGGCGTCACCAAGTTCTTTGATCTTACTCCGGCTGAATTTCAACAGAAATTTCTCGGCCTCAAGCGTCATCTTGGCCTCCCTGCTGATGCTCACAAGGCTCCGATCCTTCCTACCAACGACCTTCCCTCCGATTTTGACTGGCGCGAGCACGGTGCCGTCACGCCGGTTAAAGACCAGGGATCTTGTGGATCGTGCTGGTCTTTCAGTGCAGCCGGAGCGTTAGAAGGAGCTCACTTTTTGTCGACTGGAGAGCTTATTAGTTTGAGTGAGCAACAGCTCGTGGATTGTGATCATGAGGTGTTTTTTCAACTATTCTATGATTGTTTAGAAAATCATAGAAAATGCGATCCCGAGGAAGAAGGTGCGTGTGACGCAGGCTGCAATGGTGGACTAATGAACTCAGCCTTTGAGTACATATACAAGGTTGGTGGATTAGAACGAGAGAAGGATTATCCATATACCGGGATGGATGGCAGCTCCTGCAAATTTGACAAGAGGAAGATCGTTGCTTCTGTAGCCAACTTCAGTGTCATTTCCATTGACGAAGACCAAATTGCAGCTAATTTAGTAAAGAATGGCCCCCTTGCAGTTGCAATCAATGCAGCCTTTATGCAGACTTACGTTCGAGGCATTTCGTGCCCGTATATCTGCTCGAAGAATCTGTTGGATCATGGAGTGCTTTTGGTGGGCTATGGTTCTGCTGGATTTGCTCCTATTCGGTTTAAGAACAAAAAATACTGGATTATAAAGAATTCTTGGGGCAAAAACTGGGGAGAGAACGGATATTACAAGATCTGTAGGGGTAAGAATATTTGTGGAGTCGACTCCTTGGTCTCTACTGTGGCTGCTGCTACCACCCCATGA 1140 47.81 MDRSTLHAILFTSLLSAVVASTISSDDSLIRQVVSGGDDDQLLSAEHPFANFKAKFGKTYADQEEHDFRFTVFKSNLRRAKRHQKLDPTAVHGVTKFFDLTPAEFQQKFLGLKRHLGLPADAHKAPILPTNDLPSDFDWREHGAVTPVKDQGSCGSCWSFSAAGALEGAHFLSTGELISLSEQQLVDCDHEVFFQLFYDCLENHRKCDPEEEGACDAGCNGGLMNSAFEYIYKVGGLEREKDYPYTGMDGSSCKFDKRKIVASVANFSVISIDEDQIAANLVKNGPLAVAINAAFMQTYVRGISCPYICSKNLLDHGVLLVGYGSAGFAPIRFKNKKYWIIKNSWGKNWGENGYYKICRGKNICGVDSLVSTVAAATTP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9547756 9549620 + Conep17aG0140800.1 Cone17ag1374 456851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1374 379 SMART Inhibitor_I29_2 49 105 IPR013201 -
Cone17ag1374 379 FunFam Cysteine protease RD19A 28 374 - -
Cone17ag1374 379 Gene3D Cysteine proteinases 24 374 - -
Cone17ag1374 379 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Cone17ag1374 379 SMART pept_c1 133 374 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag1374 379 Pfam Papain family cysteine protease 133 372 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag1374 379 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Cone17ag1374 379 CDD Peptidase_C1A 134 373 IPR039417 -
Cone17ag1374 379 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 338 357 IPR025661 -
Cone17ag1374 379 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag1374 379 PRINTS Papain cysteine protease (C1) family signature 316 326 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag1374 379 PRINTS Papain cysteine protease (C1) family signature 338 344 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone17ag1374 379 SUPERFAMILY Cysteine proteinases 48 373 IPR038765 -
Cone17ag1374 379 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 314 324 IPR025660 -
Cone17ag1374 379 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 49 366 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1374 K01373 - - cit:102608509 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1106 Cone-Chr10:7854124 Cone17ag1374 Cone-Chr17:9547756 4.89E-192 dispersed
Cone17ag1374 Cone-Chr17:9547756 Cone5ag0365 Cone-Chr5:1554828 3.64E-123 dispersed
Cone12ag1175 Cone-Chr12:9301147 Cone17ag1374 Cone-Chr17:9547756 3.08E-193 wgd
Cone17ag1374 Cone-Chr17:9547756 Cone20ag0108 Cone-Chr20:487807 6.74E-227 wgd
Cone17ag1374 Cone-Chr17:9547756 Cone8ag1221 Cone-Chr8:10329136 4.13E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102