Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1375 ATGGCAACAGATCCTATGAAGCATGTAAAACTAGGATATGTCAGTGGTCTTGTTCTGAGAGAAAAATCGATGGCTTTCGAAAGGATTTTGTTTCGTGCAACCAGGGGTAATGTGTTTCTGAAGCAAGCTGTGGTTGCAAATGATGTCACTGATCCTGTGTTAGGAGAGAAGGTCAATAAAAATGTATTCATCATCTTCTATTCCGGCGAAAGAGCAAAGAACAAAATTATGAAGATATGCAAAGCTTTTGGAGCAAATCGTTACCCTTTTACAGAGGACACGAGCAAACAATTTCGGATGATTTCAGAGGAATGTTACGTATATAAATTTACTTATTTTGTCTTCTGTGTGTTTCTCTTTATGAAGCAAGAAAAGTCCACTTACCTCACAAAAAAATGTCTTGTAGCTGAAGGTTGGTGTCCTGTTTTTGCGACAAATCAGTCCATAAACATGATTGTTGCTTACTTTATGGGCTTGGCTTTGACTTTTTGCAGCTTCGAAATGCAATGCAACGGGCGACCTTTGACAGCAATTCTCAAGTTGGGGCCATATTCAAAGTTCTGCATACAAAGAAAAAACCACCAACATATTTCTGTACCAACAAGTTTACTTCTGCATTTTAGGAAATTGTGGATGCTTTTGGGTTTTATATATAATGAATTCTTTTCAGTTCCATTTCAACTATTTGGACCTTCCGCATATGGATGTCGCGATGCCTATAGGGATGCTACCACTGTAGGCTTAATAAAAATGAAGATGTCTATACTACTGGGAGTTACCCAAATGAACCTTCGGATTATACTGAGCTACTTTAATGCAAAACTCTTTGGAGACAGCATACATATTTGGCACCAACTTGTTCCCCATGTGATTTTTCTGAACAGCTTGTTTGGCTACCTTTCTCTCCTCATAATCATGAAATGGTGTACTGGCTCTCAAGCTGATCTTTATTACGTAATGATATACATGCTCCTCAGTCCTACTGATGATCTTGGTGATAATCAGCTTTTTGCAGGCCAGAAATTTCTTCAGATTCTGCTCCTCCTATCTGCCCTTGTTTCTGTACCATGGATGTTGTTTCCCAAGCCTTTTCTTTTACAGAAACAACACAAAGAGAGGCACAAAGGTCAGACATACACGCCGCTTCACAGCATTGATGACCCTGTTGAAATGGAAACATATCAGGACTCTCATGGCCATGAGGATTTTGAGTTTAGTGAGGTCTTTGTACATAAACTGATACATACCATAGAGTTTGTGCTTGGGGCAGTTTCTAATACAGCATCCTATTTACGTTTGTGGGCACTCGGGTTCGCTCATTCAGAATTGTCAAGCGTATTCTATGACAAGGTTGTACTTCTAGCTTGGGGGTACAATAGTATCATTATTCTCATTATTGGCATAGTTGTATTCGTGTGCACAACGGTTGGCGTTCTCATTATTGGCATGGTCCATGCCTTCTATGAGTTCCAAAACAAGTTCTATGAGGGGAATGGTCACAAATTTTACCCTTTTTGA 1518 39.46 MATDPMKHVKLGYVSGLVLREKSMAFERILFRATRGNVFLKQAVVANDVTDPVLGEKVNKNVFIIFYSGERAKNKIMKICKAFGANRYPFTEDTSKQFRMISEECYVYKFTYFVFCVFLFMKQEKSTYLTKKCLVAEGWCPVFATNQSINMIVAYFMGLALTFCSFEMQCNGRPLTAILKLGPYSKFCIQRKNHQHISVPTSLLLHFRKLWMLLGFIYNEFFSVPFQLFGPSAYGCRDAYRDATTVGLIKMKMSILLGVTQMNLRIILSYFNAKLFGDSIHIWHQLVPHVIFLNSLFGYLSLLIIMKWCTGSQADLYYVMIYMLLSPTDDLGDNQLFAGQKFLQILLLLSALVSVPWMLFPKPFLLQKQHKERHKGQTYTPLHSIDDPVEMETYQDSHGHEDFEFSEVFVHKLIHTIEFVLGAVSNTASYLRLWALGFAHSELSSVFYDKVVLLAWGYNSIIILIIGIVVFVCTTVGVLIIGMVHAFYEFQNKFYEGNGHKFYPF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9549760 9553082 - Conep17aG0140900.1 Cone17ag1375 456852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1375 505 PANTHER VACUOLAR PROTON ATPASES 212 505 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Cone17ag1375 505 Pfam V-type ATPase 116kDa subunit family 249 505 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1375 505 Pfam V-type ATPase 116kDa subunit family 9 103 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1375 K02154 - - csv:101209817 574.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1375 Cone-Chr17:9549760 Cone3ag1221 Cone-Chr3:30955706 1.24E-183 dispersed
Cone17ag1375 Cone-Chr17:9549760 Cone20ag0107 Cone-Chr20:482563 2.46E-207 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1033 . . . . . . . . Cmo05g00282 Cmo12g00383 . . . Car12g00408 . . Cpe07g00387 Bhi04g00220 . . . . . . Cla08g01448 Cam08g1932 Cec08g1506 Cco08g1644 Clacu08g1622 . Cre08g1408 . . Cone17ag1375 Cone20ag0107 . . . Cme03g01909 Blo17g00765 . Bda08g01248 . . Bpe05g00122 . Bma05g00148 . . . Cma12g00431 Cma05g00279 Car05g00230 . Cpe11g00231 . . . . . . . . . . . . . . . Lsi08g01352 Csa02g02102 Chy03g01413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115