Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1384 ATGGCAACGGTCACTTTCTTCTTCTTCGCTGTTACATTCTTCGCCGCCATTATTGCGACCTTGATGATACCAGCTGCGGAAAGTAGTAGCGATGTATCGTTGACGGAGATCAAAGCGTTGGAGTCTTTTAAGCTCAGTCTTCATGATCCACTCGGCGCGTTGGACAGCTGGGACTCGGCTTCTCCGTCGGCGCCTTGTGACTGGAGAGGTGTTTTCTGTTACAAAACCAGAGTTTGGGAGCTCCGTTTGCCGCGGCTCCAGCTCGGTGGTAGACTCAGTGACCAACTCGGTGAGTTGCGTCAGCTCCGTAGTCTGAGCCTCCATTCGAATTACTTCGATGGCTCTATACCTTCCTCTTTGCCGCAATGCGTTTTGCTTCGCGCCGTTTACTTGCACAATAACTCACTCTCCGGCAATCTCCCTCTGGCGATCTTCAACCTCACGAATCTTCAAATCCTCAACGTCGCTAACAACGTTCTCTCTGGAAAAATATACGGCCGATTCTTGCACAATCTTCGTTACCTCGATTTATCGTCAAATTCATTTTCCGGCGAAATACCGGACCACTTCTCGTCCGGCTCTCAGCTCCAACTCGCCAACTTCTCGTTCAATCGATTCACAGGCCAGGTTCCGGCGACCATAGGAGAGCTTCAAAAGCTGCAATATCTATATCTGGACTCGAACCGTTTGCACGGAACTCTACCTTCAGCCATAGCCAACTGTTCGTCGCTCCTCTATTTCAGCGCAGAAGATAACTCTCTGATAGGTCTGATTCCGGCCACCATTGGTGCTATTCCGAAGCTCGAAGTTCTGTCACTTTCACGAAATAAACTCTCAGGATCGGTCCCCACCACACTGTTTTGCAGCGTTTCAGTCAATTTATCGTCGCTGAGAAGCTTTCGTGTGGCATTTAATGAGCTCACGAGAATTTCGGAGCCGCCAAACGGAAGATGTTTAAGTTCGTTAGAGAATTTCGACCTTAAAGAGAATCACATTCAAGGCGTGTTTCCATCTTGGCTAACGGAAATTACTACGTTGAGAACATTAGATCTTTCCAGAAACTTCTTCTCCGGCTCGATTCCGGTTCAAGTCGGAAACCTCGCCAGCCTAGAGGAGCTAAGAATAGCTTATAATTCACTCACCGGTGAAGTTCCTAAAGAGATTTTGGGCTGTAATTTGTTACAAGTTATTGATCTTGAAGGCAATCGATTTTCAGGTCAGATTCCTTCGTTTTTAGACGGACTACAAAACTTGAAGATGTTATCTCTTGGAAAAAATTCTTTCTCCGGCTCAATTCCTTCAAGTTTCGGGAATCTTTCCGAGCTCGAGTCATTGAACTTGAGCGAAAATAATTTAATCGGAATTATTCCAGAGGAGATACTATTACTGAGCAATCTGAGCTCTTTGAATATAGGTAACAACAATTTTTCAGTGGCTGTTTTGTCAAATATTGGAGAATTGAAGAACATGCAGGTTTTGAATTTGAGTAATTGTGGATTGTCAGGAAAGATCCCTGCAAGTATTGGAAGTTTGATGAAACTTTCTGTTCTGGATTTGAGTGAGCAGAATCTTTCGGGCGAGCTACCAATCGAGCTTTTCGGGTTGCCAAGTTTACAACTTGTTGATTTGGGAGAGAACAAGTTATCTGGGAATCTTCCTGAAGGTTTTAGCAGTTTAGTTGGCTTGCTTTATCTAAACCTTAGCTCGAATGAATTCACAGGAAATATTCCGCCAACGTATGGATATCTTCGATCATTAGTCGTTCTATCTCTTTCGAACAATCATATTTCTAGTGTGATACCACTAGAGCTTGGTGATTGCTCTGATCTTGAAGTGCTTGAGCTTAGATCAAACCGTTTAAAGGGAAGTATTCCACGTGAAATTTCTCACTTATCTCGTTTGAAAGAGCTTGATTTGGGTCAAAATAGATTAACAGGTGAAATCCCAAGAGAGATTTCCAAATGCTCTGCTCTTACTACCCTGCTTTTGGACATGAATCACCTTTCCGGCCAAATACCAGATACATTGTCCAATTTGTCGAACCTTAAAGAGTTAAATTTTTCTTTAAATTCATTTACCGGATCCATCCCGGAAAATCTTGTTCATATTCCTGGTTTGCGCCTCTTGAATTTGTCAAATAATGACCTCCAAGGAGAGATTCCGGAAGCATTAGGTAATCGATTCAACGATCCTTACATATTTGCAGGAAACAGTAGATTATGTGGGAAGCCATTGGAAATAGAATGTCCTAGTGTAAGAAAGAGAGAAAGGAAGAAGCTGATTATCATAATTGGTATAGCTGTAGGAGGTGTTTGTTTAATTGCATTGTTCTGTTGCGGTTATATTTATGGGCTCTTAAGATGGCGGAAGAGGCTTAGAGAAAGAGTAACAGGGGAGAAGAAGCCTAGCCCAACAAGTACAGGCACGGGGGGAGGAAGAGTAAGCAGAGAGAGCGGCGAGAATGGTGGTCCGAAGTTAATTATGTTCAATAACAAGATAACATATGCAGAAGCATTAGAAGCAACAAGACAATTTGACGAGGAAAATGTCTTGAGCAGAGGAAGATTTGGGCTTGTGTTTAAGGCCTCGTTTAAAGACGGAATGGTGCTCGCTATTCGCCGCCTTCCTAATGGCGCTATTGATGAAGGAACTTTCCGTAAAGAAGCGGAAGAACTTGGAAAAGTCAAGCATCAAAATTTAACAGTTTTACGGGGGTATTACGCAGGCACACCATATGTAAGACTCCTTGTCTATGACTACATGCCTAATGGGAACTTAGCTACACTTCTTCAAGAGGCGTCTCATCAAGATGGTCATGTACTCAATTGGCCAATGCGTCACCTAATTGCACTCGGAATAGCCCGTGGGCTTGCGTTTTTGCACTCGGGATCATCGGTACACGGTGATGTAAAGCCACAAAATGTTCTTTTTGACGCGGATTTCGAAGCTCATTTGTCGGAATTCGGGCTGGACAGATTGATAGTTGCACACCGGCAGCCCGAAGCATCTACATCGGCTACCCCCATTGGTACATTGGGCTATGTTTCTCCGGAAGTTGCATTATCGGGGCATCCCACAAAAGAAGGCGACGTGTATAGTTTTGGGATTGTTTTGTTGGAGATACTAACGGGGAGGAAACCAGTTATGTTTACAGAAGATGAAGATATAGTGAAGTGGGTGAAAAAGCAATTGCAAAGGGGTCAGATTACGGAACTGTTGGAACCTGGGTTGCTCGAGTTAGACCCTGAATCGTCAGAATGGGAGGAGTTCTTGTTAGGAGTCAAAGTGGGCCTGCTTTGTACGACGCCTGATCCACTTGATCGACCATCAATGGCTGATATTGTTTATATGCTTGAAGGTTGTAGGGCCAGACCAGATATCCAGTCCTCAGCTGATCCCACCACGCTACACTCCCCTGCATGA 3423 44.23 MATVTFFFFAVTFFAAIIATLMIPAAESSSDVSLTEIKALESFKLSLHDPLGALDSWDSASPSAPCDWRGVFCYKTRVWELRLPRLQLGGRLSDQLGELRQLRSLSLHSNYFDGSIPSSLPQCVLLRAVYLHNNSLSGNLPLAIFNLTNLQILNVANNVLSGKIYGRFLHNLRYLDLSSNSFSGEIPDHFSSGSQLQLANFSFNRFTGQVPATIGELQKLQYLYLDSNRLHGTLPSAIANCSSLLYFSAEDNSLIGLIPATIGAIPKLEVLSLSRNKLSGSVPTTLFCSVSVNLSSLRSFRVAFNELTRISEPPNGRCLSSLENFDLKENHIQGVFPSWLTEITTLRTLDLSRNFFSGSIPVQVGNLASLEELRIAYNSLTGEVPKEILGCNLLQVIDLEGNRFSGQIPSFLDGLQNLKMLSLGKNSFSGSIPSSFGNLSELESLNLSENNLIGIIPEEILLLSNLSSLNIGNNNFSVAVLSNIGELKNMQVLNLSNCGLSGKIPASIGSLMKLSVLDLSEQNLSGELPIELFGLPSLQLVDLGENKLSGNLPEGFSSLVGLLYLNLSSNEFTGNIPPTYGYLRSLVVLSLSNNHISSVIPLELGDCSDLEVLELRSNRLKGSIPREISHLSRLKELDLGQNRLTGEIPREISKCSALTTLLLDMNHLSGQIPDTLSNLSNLKELNFSLNSFTGSIPENLVHIPGLRLLNLSNNDLQGEIPEALGNRFNDPYIFAGNSRLCGKPLEIECPSVRKRERKKLIIIIGIAVGGVCLIALFCCGYIYGLLRWRKRLRERVTGEKKPSPTSTGTGGGRVSRESGENGGPKLIMFNNKITYAEALEATRQFDEENVLSRGRFGLVFKASFKDGMVLAIRRLPNGAIDEGTFRKEAEELGKVKHQNLTVLRGYYAGTPYVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSGSSVHGDVKPQNVLFDADFEAHLSEFGLDRLIVAHRQPEASTSATPIGTLGYVSPEVALSGHPTKEGDVYSFGIVLLEILTGRKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTTPDPLDRPSMADIVYMLEGCRARPDIQSSADPTTLHSPA 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9591820 9595242 + Conep17aG0142000.1 Cone17ag1384 456861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1384 1140 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Cone17ag1384 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 734 1122 IPR050647 -
Cone17ag1384 1140 FunFam Putative LRR receptor-like serine/threonine-protein kinase 810 920 - -
Cone17ag1384 1140 SMART LRR_sd22_2 265 292 - -
Cone17ag1384 1140 SMART LRR_sd22_2 169 189 - -
Cone17ag1384 1140 SMART LRR_sd22_2 217 243 - -
Cone17ag1384 1140 SMART LRR_sd22_2 607 630 - -
Cone17ag1384 1140 SMART LRR_sd22_2 631 654 - -
Cone17ag1384 1140 SMART LRR_sd22_2 583 604 - -
Cone17ag1384 1140 SMART LRR_sd22_2 415 441 - -
Cone17ag1384 1140 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 192 - -
Cone17ag1384 1140 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 460 753 - -
Cone17ag1384 1140 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 921 1126 - -
Cone17ag1384 1140 Gene3D Phosphorylase Kinase; domain 1 816 920 - -
Cone17ag1384 1140 ProSiteProfiles Leucine-rich repeat profile. 585 606 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 SMART serkin_6 845 1118 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1384 1140 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 211 310 - -
Cone17ag1384 1140 ProSiteProfiles Leucine-rich repeat profile. 441 462 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Protein tyrosine and serine/threonine kinase 848 1065 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1384 1140 ProSiteProfiles Protein kinase domain profile. 845 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1384 1140 MobiDBLite consensus disorder prediction 796 825 - -
Cone17ag1384 1140 SUPERFAMILY Protein kinase-like (PK-like) 825 1127 IPR011009 -
Cone17ag1384 1140 Gene3D Ribonuclease Inhibitor 34 167 IPR032675 -
Cone17ag1384 1140 SUPERFAMILY L domain-like 185 518 - -
Cone17ag1384 1140 FunFam Leucine-rich repeat receptor protein kinase EMS1 336 433 - -
Cone17ag1384 1140 Gene3D Ribonuclease Inhibitor 308 389 IPR032675 -
Cone17ag1384 1140 Gene3D Ribonuclease Inhibitor 390 465 IPR032675 -
Cone17ag1384 1140 Gene3D Transferase(Phosphotransferase) domain 1 921 1134 - -
Cone17ag1384 1140 Pfam Leucine rich repeat 657 716 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine rich repeat 219 278 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine rich repeat 584 644 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine rich repeat 394 452 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 SUPERFAMILY L domain-like 435 721 - -
Cone17ag1384 1140 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine Rich Repeat 489 511 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine Rich Repeat 171 191 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine Rich Repeat 537 559 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 Pfam Leucine Rich Repeat 562 581 IPR001611 GO:0005515(InterPro)
Cone17ag1384 1140 SMART LRR_typ_2 99 123 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 169 193 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 535 558 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 294 318 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 703 727 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 265 289 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 217 241 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 319 342 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 679 702 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 439 463 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 487 511 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 631 655 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 415 438 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 367 391 IPR003591 -
Cone17ag1384 1140 SMART LRR_typ_2 583 607 IPR003591 -
Cone17ag1384 1140 Gene3D Ribonuclease Inhibitor 168 307 IPR032675 -
Cone17ag1384 1140 SUPERFAMILY L domain-like 34 311 - -
Cone17ag1384 1140 Gene3D Ribonuclease Inhibitor 466 758 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1384 Cone-Chr17:9591820 Cone7ag0369 Cone-Chr7:1606393 6.48E-54 dispersed
Cone17ag1384 Cone-Chr17:9591820 Cone20ag0097 Cone-Chr20:440664 0 wgd
Cone17ag1384 Cone-Chr17:9591820 Cone6ag1671 Cone-Chr6:12702590 2.37E-172 wgd
Cone17ag1384 Cone-Chr17:9591820 Cone9ag1593 Cone-Chr9:11419790 1.69E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82289 PF00153 Mito_carr 5.90E-23 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1384 - - - 0.0