Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1386 ATGACGGCGTTTAGTGGCGATGAAACGGCACCCTTCTTTGGCTTCCTCGGAGCTGCTGCGGCACTCGTCTTCTCATGTATGGGAGCTGCGTACGGGACGGCGAAGAGTGGAGTAGGTGTGGCGTCGATGGGAGTGATGCGACCGGAGCTGGTGATGAAGTCGATCGTTCCAGTAGTTATGGCTGGAGTGTTAGGTATTTATGGTCTGATCATAGCAGTTATCATCAGCACAGGGATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGCTACGCGCATCTTTCCTCTGGTCTTTCTTGCGGCCTCGCTGGTCTCTCTGCTGGAATGGCTATCGGAATCGTGGGTGATGCTGGTGTTAGAGCAAATGCACAGCAGCCAAAGCTGTTTGTCGGGATGATTCTTATCCTCATTTTCGCAGAAGCGCTAGCTCTATATGGCCTCATTGTCGGCATTATTCTCTCTTCCCGAGCCGGGCAGTCTAGAGCTGACTAA 495 51.72 MTAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLSCGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9600297 9601792 - Conep17aG0142200.1 Cone17ag1386 456863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1386 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Cone17ag1386 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 158 - GO:0016021(PANTHER)
Cone17ag1386 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Cone17ag1386 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 Gene3D - 10 161 IPR035921 -
Cone17ag1386 164 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone17ag1386 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Cone17ag1386 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Cone17ag1386 164 FunFam V-type proton ATPase proteolipid subunit 10 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0313 Cone-Chr1:2399176 Cone17ag1386 Cone-Chr17:9600297 7.64E-37 transposed
Cone4ag1412 Cone-Chr4:11305015 Cone17ag1386 Cone-Chr17:9600297 1.59E-97 transposed
Cone12ag1193 Cone-Chr12:9395083 Cone17ag1386 Cone-Chr17:9600297 1.02E-93 wgd
Cone17ag1386 Cone-Chr17:9600297 Cone20ag0095 Cone-Chr20:434877 1.20E-94 wgd
Cone17ag1386 Cone-Chr17:9600297 Cone8ag1241 Cone-Chr8:10414340 1.71E-65 wgd
Cone17ag1386 Cone-Chr17:9600297 Cone8ag0837 Cone-Chr8:8391216 1.13E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1386 K02155 - gmx:100804255 290.426