Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1388 ATGGAAGGAACTGGTGAAACTGGCAGTACTGTGCAACGACTTCATTCTCCGTTCGGTCAGTCATCGTCGTCGTCAATGATTAAGCCACAAAACCATTTGGATGTATCTTCTGGTTTTACTGGCTCTCAAATTGGTGCCTTTCCGCGTCAATTATCTCCGAATTTGAGTCCAGAGAACTGTAAGAGACCTGGAATTCCACCCTCACATCCCAATAATCCTTGTGCACTTCCCAATTCACAGATTGCACCTTCTCCTCGATCAGCTTCTCGGCAACCCGGCTCTCATAGTTTAAGCCCTGGGACTACTCATTCTCGGTCTGTATCTCAACCTGCGTTTTTCTCACTTGATAGCTTGCCTCCACTGAGCCCCTCGCCTTATCGCGAGCCTTCTACATCTTCACTTTCGGACCCGAGTTTGAAAGATGTTTGTGTAGAAGATAGTGTTGTTAATTCTCATGCCCCTTCACAATTGCGTGTTAATGAAGGTCTTCCTCCAAGAAGAGGGCATAGACGATCAAACAGTGATATTCCGTTACGGTTTTCTGCAATGATTCAGTCGTCGCCTCAATTGCTTCCTATTGGAAGTTGGGGTAATTCGGACCGATCTGTATCAGGTCGGGAGAACTTGGGGATGGAGAAGCCGGTTCAGTTGGTAATGAAGCATGGAGTAAATATGGATAAGGATGGGAACATAAATTTGGAAGAGATGGGTGAGAAGAAATCTGAGGTTGATATTGGAGATGATTTGTTTAGTGCGTATATGAATCTTGATAACATTGATAAGATGACTTCATCTGGGACCGAGGACAAGGATTTTGATAGCAGAGTTAGTGGGTCCAAGACAAATGGAGGTGAAAGCAGTGACAATGAAGTGGAAAGTTGTGTAAAAGCAAATTTAGGTTATGCAAATGAGAAGAAGGAAGGAGGGAAGAGAAGGGCTGGTGGAGAGATTACACAGCCTGCAAGACACTATAGAAGTGTTTCAATGGATAGTTATATGGACAGCTTGAACTTTTACAGTGACCCACCTAAGCTCCCGCCTATGGGAACTCAAGTGGGTCAACAACATTCACCTAGCAATTCACTGGATGGCAACTCGAGTAGATTCAACATGGAGTTTGGAAATGGCGAGTTCAGTGGAGTTGAGCTGAAGAAGATCATGGAAAATGAGAAACTTGCTGAGATTGCCTTGTCAGATCCTAAACGTGCCAAGAGGATTTTGGCTAATCGTCAATCAGCTGCACGGTCCAAAGAGCGGAAGATGCGGTACATTTCAGAATTAGAACACAAGGTGCAGACTCTGCAGACAGAAGCAACCAGTTTGTCTGCCCAGCTCACAAAGTTACAGAGAGATTCAATGGGACTATCAAGTGAGAACAATGAATTAAAATTCCGTGTTCAGGCCATGGAGCAACAGGCCCAACTTAAAGATGCTCTTAATGAAGCTCTGACAGCAGAAGCCCAGCGTCTAAAGCTCGGGGCTGCAGATCTAGGCGGGGAGGCTCACCTCTCAAGCCGTATGGCTCAGCAGCTCACAATTAATCAACCCATGTTCCAACCCAACCACCTCGGTCTTTATCAGTTACAGCAACAGCAGTTACCATCGCAGCTGAGGAACATGCCGAACCATGAAATGCAAACCAAGCAGCAGAACGGTGATGCAGCTAAACCTGAGCCAAAACAATAG 1686 45.61 MEGTGETGSTVQRLHSPFGQSSSSSMIKPQNHLDVSSGFTGSQIGAFPRQLSPNLSPENCKRPGIPPSHPNNPCALPNSQIAPSPRSASRQPGSHSLSPGTTHSRSVSQPAFFSLDSLPPLSPSPYREPSTSSLSDPSLKDVCVEDSVVNSHAPSQLRVNEGLPPRRGHRRSNSDIPLRFSAMIQSSPQLLPIGSWGNSDRSVSGRENLGMEKPVQLVMKHGVNMDKDGNINLEEMGEKKSEVDIGDDLFSAYMNLDNIDKMTSSGTEDKDFDSRVSGSKTNGGESSDNEVESCVKANLGYANEKKEGGKRRAGGEITQPARHYRSVSMDSYMDSLNFYSDPPKLPPMGTQVGQQHSPSNSLDGNSSRFNMEFGNGEFSGVELKKIMENEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATSLSAQLTKLQRDSMGLSSENNELKFRVQAMEQQAQLKDALNEALTAEAQRLKLGAADLGGEAHLSSRMAQQLTINQPMFQPNHLGLYQLQQQQLPSQLRNMPNHEMQTKQQNGDAAKPEPKQ 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9607920 9610554 + Conep17aG0142400.1 Cone17ag1388 456865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1388 561 CDD bZIP_plant_RF2 402 451 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1388 561 MobiDBLite consensus disorder prediction 262 292 - -
Cone17ag1388 561 Gene3D - 400 452 - -
Cone17ag1388 561 SMART brlzneu 397 461 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1388 561 MobiDBLite consensus disorder prediction 74 115 - -
Cone17ag1388 561 SUPERFAMILY Leucine zipper domain 401 452 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1388 561 MobiDBLite consensus disorder prediction 1 138 - -
Cone17ag1388 561 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 399 462 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1388 561 FunFam probable transcription factor PosF21 400 453 - -
Cone17ag1388 561 MobiDBLite consensus disorder prediction 151 175 - -
Cone17ag1388 561 MobiDBLite consensus disorder prediction 531 554 - -
Cone17ag1388 561 Pfam bZIP transcription factor 401 459 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone17ag1388 561 Coils Coil 466 488 - -
Cone17ag1388 561 MobiDBLite consensus disorder prediction 277 292 - -
Cone17ag1388 561 MobiDBLite consensus disorder prediction 531 561 - -
Cone17ag1388 561 MobiDBLite consensus disorder prediction 1 57 - -
Cone17ag1388 561 Coils Coil 417 451 - -
Cone17ag1388 561 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 155 546 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1388 Cone-Chr17:9607920 Cone20ag0385 Cone-Chr20:1803649 3.77E-39 dispersed
Cone12ag1197 Cone-Chr12:9407322 Cone17ag1388 Cone-Chr17:9607920 9.01E-153 wgd
Cone17ag1388 Cone-Chr17:9607920 Cone20ag0093 Cone-Chr20:425791 0 wgd
Cone17ag1388 Cone-Chr17:9607920 Cone8ag1245 Cone-Chr8:10426305 2.80E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45120 PF03638 TCR 3.90E-11 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1388 - - - 0.0