Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone17ag1388 | ATGGAAGGAACTGGTGAAACTGGCAGTACTGTGCAACGACTTCATTCTCCGTTCGGTCAGTCATCGTCGTCGTCAATGATTAAGCCACAAAACCATTTGGATGTATCTTCTGGTTTTACTGGCTCTCAAATTGGTGCCTTTCCGCGTCAATTATCTCCGAATTTGAGTCCAGAGAACTGTAAGAGACCTGGAATTCCACCCTCACATCCCAATAATCCTTGTGCACTTCCCAATTCACAGATTGCACCTTCTCCTCGATCAGCTTCTCGGCAACCCGGCTCTCATAGTTTAAGCCCTGGGACTACTCATTCTCGGTCTGTATCTCAACCTGCGTTTTTCTCACTTGATAGCTTGCCTCCACTGAGCCCCTCGCCTTATCGCGAGCCTTCTACATCTTCACTTTCGGACCCGAGTTTGAAAGATGTTTGTGTAGAAGATAGTGTTGTTAATTCTCATGCCCCTTCACAATTGCGTGTTAATGAAGGTCTTCCTCCAAGAAGAGGGCATAGACGATCAAACAGTGATATTCCGTTACGGTTTTCTGCAATGATTCAGTCGTCGCCTCAATTGCTTCCTATTGGAAGTTGGGGTAATTCGGACCGATCTGTATCAGGTCGGGAGAACTTGGGGATGGAGAAGCCGGTTCAGTTGGTAATGAAGCATGGAGTAAATATGGATAAGGATGGGAACATAAATTTGGAAGAGATGGGTGAGAAGAAATCTGAGGTTGATATTGGAGATGATTTGTTTAGTGCGTATATGAATCTTGATAACATTGATAAGATGACTTCATCTGGGACCGAGGACAAGGATTTTGATAGCAGAGTTAGTGGGTCCAAGACAAATGGAGGTGAAAGCAGTGACAATGAAGTGGAAAGTTGTGTAAAAGCAAATTTAGGTTATGCAAATGAGAAGAAGGAAGGAGGGAAGAGAAGGGCTGGTGGAGAGATTACACAGCCTGCAAGACACTATAGAAGTGTTTCAATGGATAGTTATATGGACAGCTTGAACTTTTACAGTGACCCACCTAAGCTCCCGCCTATGGGAACTCAAGTGGGTCAACAACATTCACCTAGCAATTCACTGGATGGCAACTCGAGTAGATTCAACATGGAGTTTGGAAATGGCGAGTTCAGTGGAGTTGAGCTGAAGAAGATCATGGAAAATGAGAAACTTGCTGAGATTGCCTTGTCAGATCCTAAACGTGCCAAGAGGATTTTGGCTAATCGTCAATCAGCTGCACGGTCCAAAGAGCGGAAGATGCGGTACATTTCAGAATTAGAACACAAGGTGCAGACTCTGCAGACAGAAGCAACCAGTTTGTCTGCCCAGCTCACAAAGTTACAGAGAGATTCAATGGGACTATCAAGTGAGAACAATGAATTAAAATTCCGTGTTCAGGCCATGGAGCAACAGGCCCAACTTAAAGATGCTCTTAATGAAGCTCTGACAGCAGAAGCCCAGCGTCTAAAGCTCGGGGCTGCAGATCTAGGCGGGGAGGCTCACCTCTCAAGCCGTATGGCTCAGCAGCTCACAATTAATCAACCCATGTTCCAACCCAACCACCTCGGTCTTTATCAGTTACAGCAACAGCAGTTACCATCGCAGCTGAGGAACATGCCGAACCATGAAATGCAAACCAAGCAGCAGAACGGTGATGCAGCTAAACCTGAGCCAAAACAATAG | 1686 | 45.61 | MEGTGETGSTVQRLHSPFGQSSSSSMIKPQNHLDVSSGFTGSQIGAFPRQLSPNLSPENCKRPGIPPSHPNNPCALPNSQIAPSPRSASRQPGSHSLSPGTTHSRSVSQPAFFSLDSLPPLSPSPYREPSTSSLSDPSLKDVCVEDSVVNSHAPSQLRVNEGLPPRRGHRRSNSDIPLRFSAMIQSSPQLLPIGSWGNSDRSVSGRENLGMEKPVQLVMKHGVNMDKDGNINLEEMGEKKSEVDIGDDLFSAYMNLDNIDKMTSSGTEDKDFDSRVSGSKTNGGESSDNEVESCVKANLGYANEKKEGGKRRAGGEITQPARHYRSVSMDSYMDSLNFYSDPPKLPPMGTQVGQQHSPSNSLDGNSSRFNMEFGNGEFSGVELKKIMENEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATSLSAQLTKLQRDSMGLSSENNELKFRVQAMEQQAQLKDALNEALTAEAQRLKLGAADLGGEAHLSSRMAQQLTINQPMFQPNHLGLYQLQQQQLPSQLRNMPNHEMQTKQQNGDAAKPEPKQ | 561 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9607920 | 9610554 | + | Conep17aG0142400.1 | Cone17ag1388 | 456865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone17ag1388 | 561 | CDD | bZIP_plant_RF2 | 402 | 451 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 262 | 292 | - | - | |
Cone17ag1388 | 561 | Gene3D | - | 400 | 452 | - | - | |
Cone17ag1388 | 561 | SMART | brlzneu | 397 | 461 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 74 | 115 | - | - | |
Cone17ag1388 | 561 | SUPERFAMILY | Leucine zipper domain | 401 | 452 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 1 | 138 | - | - | |
Cone17ag1388 | 561 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 399 | 462 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone17ag1388 | 561 | FunFam | probable transcription factor PosF21 | 400 | 453 | - | - | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 151 | 175 | - | - | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 531 | 554 | - | - | |
Cone17ag1388 | 561 | Pfam | bZIP transcription factor | 401 | 459 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone17ag1388 | 561 | Coils | Coil | 466 | 488 | - | - | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 531 | 561 | - | - | |
Cone17ag1388 | 561 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Cone17ag1388 | 561 | Coils | Coil | 417 | 451 | - | - | |
Cone17ag1388 | 561 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 155 | 546 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1388 | Cone-Chr17:9607920 | Cone20ag0385 | Cone-Chr20:1803649 | 3.77E-39 | dispersed | |
Cone12ag1197 | Cone-Chr12:9407322 | Cone17ag1388 | Cone-Chr17:9607920 | 9.01E-153 | wgd | |
Cone17ag1388 | Cone-Chr17:9607920 | Cone20ag0093 | Cone-Chr20:425791 | 0 | wgd | |
Cone17ag1388 | Cone-Chr17:9607920 | Cone8ag1245 | Cone-Chr8:10426305 | 2.80E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45120 | PF03638 | TCR | 3.90E-11 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone17ag1388 | - | - | - | 0.0 |