Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1394 ATGGGGGTTCCAGCTTTCTATAGGTGGTTGGCGGAGAAGTACCCTATGGTGGTTGTGGACGTGCTTGAAGAAGAGCCTGTCGAAATCGACGGGATTTCTATTCCTGTTGATACCAGTAAACCCAACCCTAATAATATTGAATACGATAACCTCTACCTCGACATGAATGGCATTATCCATCCATGTTTTCATCCCGAAGATAGGCCTTCCCCAACAACTTATGGAGAGGTATTTCAGTGCATGTTTGACTATATTGATAGACTGTTTGTGATGGTTCGGCCCCGAAAGTTGCTGTACATGGCTATTGACGGTGTTGCCCCTAGAGCTAAAATGAATCAACAACGGTCACGGCGTTTCAGAGCTGCAAAGGATGCAGCAGATGCGGTAGCTGAGGAAGAACGGCTACGCCAAGAGTTCGAGAGGGAGGGAAGAAAGCTACCACCTAAAGAGGAGTCACAAACTTTTGATTCCAATGTTATCACTCCCGGAACAGAATTCATGGATGTTTTATCCATTGCTTTGCAGTACTACATCCATCTTAGACTCAATAATGATCCTGGGTGGAAAAACATTAAGGTTCTTCTTTCTGATGCTAATGTTCCGGGTGAGGGGGAGCATAAAATAATGTCCTACATTCGTCTTCAGAGAAATCTTCCTGGTTTTGATCCAAATACGCGACATTGCCTGTGTGGATTGGATGCAGATTTAATCATGTTGGCATTGGCTACTCACGAAGTTCATTTTTCTATTCTTCGTGAGATTGTGTTCACTCCTGGCCAGCAAGACAAGTGTTTTTTATGTGGCCAAGTCGGTCATTTAGCAGCAAATTGCCAGGGTGAAGCTAAGAGAAAGGCTGGAGAGTTCGATGAGAAAGGTGAAAATGCTGTTACGGCCAAAAAGCCATACCAGTTTCTCAACATATGGACTTTAAGAGAGTATTTGGAGCATGAGATGAGAATTCCTAATATACCATTTGAGATCGATGTGGAAAGAATTGTGGATGATTTTATATTCATGTGTTTCTTTGTTGGCAATGATTTCTTACCACATATGCCGACGTTGGAAATCCGTGAGGGTGCTATCAACTTGCTCATGGCTGTATACAAGAAGGAATTTAGGGCATTGGGTGGATATTTGACAAATGGAAGCAAGATTGACTTGACCAGGGTGGAACGCTTCATTCAGGCTATAGGAAGTTACGAAGATAAAATATTTCAGAAAAGAGCTCGTTTGCATCAGCGTCAAGCAGATAGGTTAAAGCGTGTAAAGGGGCAAACAAGAAGAGGGGATGATGTGGAACCTCAAGCTGCACCTGACTCTCTGGTAGCAATTTCTCGGTTTCATGGTTCTCGTCTTGCCTCAGCCCCTACCCCTTCTCCATATGGACAATCAGGGCAGGGCTTCAGCTCTGATAGCTCAGTGTCTAGTAGAAAAGACTACCAACTTGGACAAGCAACTTCAGGTTTATCTGATCCTGCAATTAAGAACAATAAAACATTAGCATCTGATGGTAGGCCGAATAAAGTTGCACGATTGTCATCTGGGGCTTCTGTAGGTGCAGCTATTGTTGAAGTAGAAAATGCCCTAGAATCAGAAGTACATGAGAACAAAGAGGAATTGAAATCCAAGCTCAAGGAGGTACTTCGTGAGAAGTCGGATGTATTCAACTCCAATGGTCAAGAAGAAGATGAGATTAAATTGGGAGTACCAGGGTGGAAAGATAGGTATTATGAAAAAAAGTTCTCTGCAGAATCTCCAGAGGAGCTTGATGCTATACGAAAAGATGTGGTTCTGAGATACACAGAAGGGCTTTGCTGGGTAATGCACTACTATTATGAAGGGGTTTGTTCCTGGCAATGGTTTTATCCATATCACTATGCCCCCTTTGCTTCCGATCTGAAGGGTCTTAGTAAGCTCGATATAAAATTTGATCTTGGTACTCCCTTTAAACCATTCAATCAGCTATTGGGGGTTTTCCCTGCTGCAAGTTCCCATGCACTTCCGGACAACTATAGGAAATTAATGACTGATCCAAACTCACCTATTTCTGATTTCTACCCTAGTGATTTTGAGGTTGATATGAATGGGAAACGATTCTCGTGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAGCCCGACTTCTTGCAGAGGTTAGAAAAGTTGAGCACACACTGACGGAGGAGGAAGCACGGAGAAACAGTGTGAAGTTTGACATGCTTTTTGTGACATCGTCCCACCCCCTTTCTGTTTGCATTTATTCACTTGACCACCAATGTAAAAAGTTGACTGAGAAAGAGCGTGCTGAGGTGAAGGAAAAAATTAATCCTGAACACAGTGGAGGTATGAATGGTTATATGTCTCCATGTGCTGGAGACCCCTGCCCCCCTATATTCAGGTCCCCTGTTGAAGGGCTAGAAGATATCATGGAAAATCAAGTCATATGTGTTGTATACAAACTCCCAGATCCACACCAGCACATCGCCCAACCACCTCCAGGGGTGATATTCCCTGAAAAGATGGTTGAAAGGAGTGATTTAAAACCCGACCCCGTTTTATGGCACGAAGATAATGGAAGGCGGCAATCAAATAATGATAGGTATGGCGGAAAGGAAAGACAGGGCGGAAATGAAAGGCAGGATTTTAAAGGAGCCATTTCAGGCAATGAGCTCAATGTTGCCTCACATCGGCTCATTGTCAACAGTTTGCAAGTGAAGGGGGATCACAATGGTTACAGCCGACATGGGCCTCCACATGCTGATTACGGGCCCCCACATGCCAATTATGGGCCGCCTTTATACCCATCACAGCCTCAATATTCAGATTACAGATCACAGGATGCAGGTCACCACAGAATGGTTCCTTCTAGACCGGCTTACCCTCAACAGTACCATAGATATCAACCAGCCCCCTCATCTCAACCCCCTAACCATGCTTCTGACAATAGAAATTATTCTCAGCATCATGGAAGTAATAACCAATCAAATGTCCATAATCCTGGAAACATGTACTACCAACCAAGACCTCATCAAGATGTAGAACCTGTTTATCTTCATGGACCTGTTTCACATAACCCAGGTGGGGCCCGGCCTACACCTTATCAAGGCGGTTACAACAATTATTATGGACCACCCGGAGCTTCCAGTCATCAACAGTCAGGTGGTGGTGGTCAATGGGGATCTCATAGCAGCATTCCACCTAGAGCGTATGATCAACAAGGAGGTAACAATTACTCTGTATTAGATAGAAGAGCGATCAGGGGACCTCCACCACCAGCTGGCGATGGCCACAACAGGCAGAGGCCGCCCCGGCCCCAAACAGGATATGGACACAAGTACTAG 3342 44.49 MGVPAFYRWLAEKYPMVVVDVLEEEPVEIDGISIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTYGEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAVAEEERLRQEFEREGRKLPPKEESQTFDSNVITPGTEFMDVLSIALQYYIHLRLNNDPGWKNIKVLLSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLCGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFLCGQVGHLAANCQGEAKRKAGEFDEKGENAVTAKKPYQFLNIWTLREYLEHEMRIPNIPFEIDVERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTNGSKIDLTRVERFIQAIGSYEDKIFQKRARLHQRQADRLKRVKGQTRRGDDVEPQAAPDSLVAISRFHGSRLASAPTPSPYGQSGQGFSSDSSVSSRKDYQLGQATSGLSDPAIKNNKTLASDGRPNKVARLSSGASVGAAIVEVENALESEVHENKEELKSKLKEVLREKSDVFNSNGQEEDEIKLGVPGWKDRYYEKKFSAESPEELDAIRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLSKLDIKFDLGTPFKPFNQLLGVFPAASSHALPDNYRKLMTDPNSPISDFYPSDFEVDMNGKRFSWQGIAKLPFIDEARLLAEVRKVEHTLTEEEARRNSVKFDMLFVTSSHPLSVCIYSLDHQCKKLTEKERAEVKEKINPEHSGGMNGYMSPCAGDPCPPIFRSPVEGLEDIMENQVICVVYKLPDPHQHIAQPPPGVIFPEKMVERSDLKPDPVLWHEDNGRRQSNNDRYGGKERQGGNERQDFKGAISGNELNVASHRLIVNSLQVKGDHNGYSRHGPPHADYGPPHANYGPPLYPSQPQYSDYRSQDAGHHRMVPSRPAYPQQYHRYQPAPSSQPPNHASDNRNYSQHHGSNNQSNVHNPGNMYYQPRPHQDVEPVYLHGPVSHNPGGARPTPYQGGYNNYYGPPGASSHQQSGGGGQWGSHSSIPPRAYDQQGGNNYSVLDRRAIRGPPPPAGDGHNRQRPPRPQTGYGHKY 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9638569 9645457 + Conep17aG0143000.1 Cone17ag1394 456871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 416 434 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 416 439 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 849 883 - -
Cone17ag1394 1113 FunFam 5'-3' exoribonuclease 636 736 - -
Cone17ag1394 1113 FunFam 5'-3' exoribonuclease 1 136 - -
Cone17ag1394 1113 PIRSF Exonuclease_Xrn2 1 1040 IPR017151 GO:0004534(InterPro)|GO:0005634(InterPro)|GO:0006139(InterPro)
Cone17ag1394 1113 Pfam Zinc knuckle 263 277 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone17ag1394 1113 Coils Coil 122 142 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 1042 1079 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 907 1113 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 456 503 - -
Cone17ag1394 1113 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676(InterPro)|GO:0004527(InterPro)
Cone17ag1394 1113 SMART c2hcfinal6 263 279 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone17ag1394 1113 Coils Coil 526 550 - -
Cone17ag1394 1113 FunFam 5'-3' exoribonuclease 149 374 - -
Cone17ag1394 1113 ProSiteProfiles Zinc finger CCHC-type profile. 263 277 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone17ag1394 1113 CDD PIN_XRN1-2-like 51 314 - -
Cone17ag1394 1113 Gene3D - 634 736 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 452 508 - -
Cone17ag1394 1113 Gene3D - 144 393 - -
Cone17ag1394 1113 Gene3D - 1 136 - -
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 966 1002 - -
Cone17ag1394 1113 Pfam Xrn1 helical domain 327 847 IPR041412 -
Cone17ag1394 1113 SUPERFAMILY Retrovirus zinc finger-like domains 259 279 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone17ag1394 1113 MobiDBLite consensus disorder prediction 849 879 - -
Cone17ag1394 1113 PANTHER 5'->3' EXORIBONUCLEASE 1 1011 IPR027073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1394 K12619 - - csv:101206774 1511.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0702 Cone-Chr10:3530238 Cone17ag1394 Cone-Chr17:9638569 0 dispersed
Cone17ag1394 Cone-Chr17:9638569 Cone3ag0720 Cone-Chr3:3681461 0 dispersed
Cone17ag1394 Cone-Chr17:9638569 Cone20ag0086 Cone-Chr20:394377 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1088 . Blo12g00889 . Bda03g00284 . Bpe04g00241 Bma04g00241 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1394 Cone20ag0439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005436 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 2 1 39